Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq10 176 9e-39 seq2 100 6e-16 seq9 91.5 3e-13 >seq10 Length=1852485 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||||||||| || || || | |||||| || || |||||||||||||| Sbjct 1590789 CCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1590848 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||||||||| | || || |||||| ||| Sbjct 1590849 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATAAGCCGCTGCTGGTCAGGCGGG 1590908 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | || || | ||| || | || || Sbjct 1590909 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACC 1590968 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| || || |||||||| Sbjct 1590969 TCAAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1591015 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||||||||| || || || | |||||| || || |||||||||||||| Sbjct 1590561 CCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1590620 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || |||||||| | || || |||||| ||| Sbjct 1590621 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGG 1590680 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | || || | ||| || | || || Sbjct 1590681 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACC 1590740 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| || || |||||||| Sbjct 1590741 TCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1590787 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | |||||| || || |||||||||||||| Sbjct 1590333 CCACCGCGCAGGCGCAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1590392 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || |||||||| | || || |||||| ||| Sbjct 1590393 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGG 1590452 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | || || | ||| || | || || Sbjct 1590453 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACC 1590512 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| || || |||||||| Sbjct 1590513 TCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1590559 Score = 100 bits (110), Expect = 6e-16 Identities = 339/524 (65%), Gaps = 12/524 (2%) Strand=Plus/Minus Query 273597 GGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACC 273656 |||||||| | || ||| || ||||| || ||||| || ||| || |||||| Sbjct 1769536 GGGTTGTAGTTTGGCACGGACGAGGACCAGCCCGTGCCGATGCCGTCGCTGCCGTTCACC 1769477 Query 273657 AGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAA 273716 || | | || | || || | ||| | || |||||||| | | || ||||| | Sbjct 1769476 AGCACCATGGGCAGGATGGGCGCGTAAAACTCTGGCTCAATCGTCTGCCCGTCGTCCTCC 1769417 Query 273717 AGGTACTTCAACAAAGCATCATCCGTATCAAC--GAAAACCTTTCGCGTCTGAGGATTCA 273774 |||| || | || || || |||| ||| ||| | ||| |||| | | || || Sbjct 1769416 AGGTGGTTGAGCAGGGCGTCGTCCGC--CAAGTGGAAGATCTTGCGCGCCAGCGGCGACA 1769359 Query 273775 GTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAA 273834 || ||||| ||||| | | || || ||||||||| || ||| | || |||| Sbjct 1769358 GTGAGGTGAAGATGTAACGCGAGCTGGCCGCGTCCTTGCCGCCCGCCAGGCGCGTGCCAA 1769299 Query 273835 ACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATAT 273894 |||| || |||||| ||| ||| | ||||||||| || ||| | ||| ||||| Sbjct 1769298 ACTGGCCAATGGGCAGCAGCAGGTTGAGGTTGTTGCTGCCCACGAACCGCTGCGCCATGC 1769239 Query 273895 TCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATAT 273954 ||| || || || ||| | |||||||||||| ||||| ||| || | || | Sbjct 1769238 CCACAATGGTGCCGGCCAGGCTCATCTCGCCGTGGTGGTAGGCCGAGTGCTCCGAGACGT 1769179 Query 273955 AACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACA 274014 | || | ||| || ||||| | ||| | | | || |||||||| ||| | | Sbjct 1769178 ACCCGGCAAGCTGCGCCACCTTGATCTCGTCCTTGAGCTTGCGCTTGAAGCAGGAGAAGA 1769119 Query 274015 ACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAAT--ACTG--CGTTCC 274070 |||||| ||||| ||||||| ||| || | || || || || | |||| Sbjct 1769118 GCACCTTGCGCTGGCCCGGCTTGAGCCCGTCCATGATGCTGGGGATGGACCGCACGTT-- 1769061 Query 274071 AAATCATACCGAGAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 || | ||||||| |||||| ||||||| ||||||||| Sbjct 1769060 --GTCCGCCATGGAGAACAGAATCAGCTCCTTGTTAATGAAGTC 1769019 >seq2 Length=2479747 Score = 100 bits (110), Expect = 6e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| |||||||| || || ||| | ||||| | ||| |||| ||||| || Sbjct 85836 ACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGAGTCAGAAGGCTCGACCTC 85777 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 85776 GAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 85732 >seq9 Length=1890124 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| |||||||| || || ||| | ||||| | ||| || | ||||| || Sbjct 274678 ACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGAGTCGGAGGGCTCGACCTC 274737 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| ||||| ||||| | ||||| || || |||||||| Sbjct 274738 GAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 274782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737134652716