Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq10 134 1e-26 seq2 87.8 1e-12 >seq10 Length=1852485 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||| |||||||||||||||||||| ||||||||||| || Sbjct 1590785 CATGCCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTC 1590844 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| || |||||||| ||||||||||| | |||||||| || | Sbjct 1590845 GCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATAAGCCGCTGCTGGTCAGG 1590904 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| || | | |||| | || | ||| | | | Sbjct 1590905 CGGGATGCCCTCCTTGTCCTGGATCTTC-GCCTTGACGTTCTCAATCGAGTCAGATGGCT 1590963 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | ||| || ||||| || || || |||||||| ||||| |||||| Sbjct 1590964 CAACCTCAAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 1591016 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| |||||||||||||||||||| ||||||||||| ||| Sbjct 1590333 CCACCGCGCAGGCGCAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1590392 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| || |||||||| || |||||||| | |||||||| || | || Sbjct 1590393 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGG 1590452 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| || | | |||| | || | ||| | | || || Sbjct 1590453 ATGCCCTCCTTGTCCTGGATCTTC-GCCTTGACGTTCTCAATCGAGTCAGATGGCTCAAC 1590511 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| | || || ||||| || || || |||||||| ||||| |||||| Sbjct 1590512 CTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 1590560 Score = 125 bits (138), Expect = 5e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||| |||||||||||||||||||| ||||||||||| || Sbjct 1590557 CATGCCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTC 1590616 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| || |||||||| || |||||||| | |||||||| || | Sbjct 1590617 GCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGG 1590676 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| || | | |||| | || | ||| | | | Sbjct 1590677 CGGGATGCCCTCCTTGTCCTGGATCTTC-GCCTTGACGTTCTCAATCGAGTCAGATGGCT 1590735 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| || || || |||||||| ||||| |||||| Sbjct 1590736 CAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 1590788 >seq2 Length=2479747 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| ||||| || ||||||||||| || |||||||| ||| Sbjct 86923 CCACCGCGCAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 86864 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| ||||||||||| || || ||||| | |||||||||||| | || Sbjct 86863 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 86804 Query 44231 ACACCT 44236 | |||| Sbjct 86803 ATACCT 86798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989724343018