Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10 111 4e-19 >seq10 Length=1852485 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || ||||| || || ||| Sbjct 1591012 CAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTTGAGGTTGAGCCATCTGAC 1590953 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 1590952 TCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 1590893 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||| || ||||| || || || | || || ||| || ||| || Sbjct 1590892 CGGCTTATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAACATC 1590833 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| Sbjct 1590832 CAGAAGGAGAGCACGCTTCACCTTGT 1590807 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || ||||| || || ||| Sbjct 1590556 CAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCATCTGAC 1590497 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 1590496 TCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 1590437 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || || || | || || ||| || ||| || Sbjct 1590436 CGGCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAACATC 1590377 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| Sbjct 1590376 CAGAAGGAGAGCACGCTTCACCTTGT 1590351 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || ||||| || || ||| Sbjct 1590784 CAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCATCTGAC 1590725 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 1590724 TCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 1590665 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || || || | || || ||| || ||| || Sbjct 1590664 CGGCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAACATC 1590605 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| Sbjct 1590604 CAGAAGGAGAGCACGCTTCACCTTGT 1590579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728824887876