Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq10 134 1e-26 seq2 102 8e-17 >seq10 Length=1852485 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||| || || ||||||||||||||||| ||||| |||||| Sbjct 1590788 GCCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCT 1590847 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || |||||||||||||| || || || ||||| ||||| | || Sbjct 1590848 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATAAGCCGCTGCTGGTCAGGCGG 1590907 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACT 41810 | || |||||||||| ||| || ||| |||| | || | ||| | || Sbjct 1590908 GATGCCCTCCTTGTCCTGGATCTTCGCCTT----GACGTTCTCAATCGAGTCAGATGGCT 1590963 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||| | ||| || || || || ||||||||||| || || ||||||||| Sbjct 1590964 CAACCTCAAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 1591016 Score = 125 bits (138), Expect = 7e-24 Identities = 169/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||| || || ||||||||||||||||| ||||| |||||| Sbjct 1590332 GCCACCGCGCAGGCGCAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCT 1590391 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| || || || || ||||| ||||| | || Sbjct 1590392 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGG 1590451 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACT 41810 | || |||||||||| ||| || ||| |||| | || | ||| | || Sbjct 1590452 GATGCCCTCCTTGTCCTGGATCTTCGCCTT----GACGTTCTCAATCGAGTCAGATGGCT 1590507 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||| | || || || || || ||||||||||| || || ||||||||| Sbjct 1590508 CAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 1590560 Score = 125 bits (138), Expect = 7e-24 Identities = 169/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||| || || ||||||||||||||||| ||||| |||||| Sbjct 1590560 GCCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCT 1590619 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| || || || || ||||| ||||| | || Sbjct 1590620 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGG 1590679 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACT 41810 | || |||||||||| ||| || ||| |||| | || | ||| | || Sbjct 1590680 GATGCCCTCCTTGTCCTGGATCTTCGCCTT----GACGTTCTCAATCGAGTCAGATGGCT 1590735 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||| | || || || || || ||||||||||| || || ||||||||| Sbjct 1590736 CAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 1590788 >seq2 Length=2479747 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || || || |||||||||||||||||||| |||||| Sbjct 86923 CCACCGCGCAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 86864 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| ||||| || || ||||| || |||| ||| Sbjct 86863 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGGGG 86805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303110064800