Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq39701 194 2e-44 >seq39701 Length=4095 Score = 194 bits (214), Expect = 2e-44 Identities = 488/742 (66%), Gaps = 0/742 (0%) Strand=Plus/Minus Query 16799 TCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACC 16858 || || || || || || || |||||||| | | | |||||||| || ||| || Sbjct 2938 TCGGCCACGAACTCGATGTACTGGCACATAAGCTTGTGATTCATTCCAATTAGAGCCACG 2879 Query 16859 GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCA 16918 ||||| || ||||||| ||| |||||| || ||| || || ||| ||||| Sbjct 2878 GGAAGGGCATCCGTCAGGAATTCTTGCTCGATCTTAACAGCATCTACAATGATACTCTTC 2819 Query 16919 ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAA 16978 || ||| || ||| || ||| || || | | |||||| || || || || Sbjct 2818 ACGACTTCGGCGCTGGGTTTACGTTCCAGGTGGTCGTGTAGCAGACAAGCAAAGTCACAG 2759 Query 16979 TGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCT 17038 || | |||||| ||||||||||| | || || || || || | || ||||| || Sbjct 2758 TGGAGTCCCTCATCTCTGCTGATCAACTCATTGGAGAAAGTTAGTCCAGGCATTAGCCCA 2699 Query 17039 CGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGAT 17098 || ||||| | |||||| |||| ||| || || ||||| || || |||||||| || | Sbjct 2698 CGCTTCTTCATCCAAAAGATCGAGGCAAAGGAGCCAGAGAAAAAGATACCCTCTACTGCA 2639 Query 17099 GCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACC 17158 || || || | | || || || | | | | | | || ||||| || | || Sbjct 2638 GCGAAGGCTACCACACGCTCACCGAAACTGGAGGCATCGTCGTTGATCCACTTGAGGGCC 2579 Query 17159 CACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTT 17218 || ||||| |||| ||| | | | | || || || || ||||||| || || || Sbjct 2578 CAGTCGGCCTTTTTCTTGACGGCAGGGAGTGTCTCAATAGCGTTAAATAGGTTATCCTTC 2519 Query 17219 TCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTC 17278 || | |||| || || || ||||| || | |||||| || ||||| |||||| Sbjct 2518 TCACGGGGGTCACGGATGTATGTCTCGATAAGCGTGGAGTACATCTCAGAGTGGATGTTC 2459 Query 17279 TCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAG 17338 || ||||| ||||| |||||||| ||||| || || || || ||||| ||||| || | Sbjct 2458 TCAATGGCGATCTGGAATCCGTAGAAGCAACGTGCCTCGGCGATTTGTACTTCACCGCTG 2399 Query 17339 AATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATA 17398 || || || ||||| |||||||| || || || || || ||||| || ||||| | | Sbjct 2398 AAGCGCTCGAGGAGATTCTCGTTCACAATACCATCACTGGCAGCGAAGAAAGCCAACACA 2339 Query 17399 TGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGAT 17458 || | ||| | ||| | |||| |||||| || ||| || Sbjct 2338 TGGGATAAGAAGTGGCGCTCGCCATCCTTAAGGTTCTCCCAGTCAGCTAGATCACGAGAC 2279 Query 17459 ATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATA 17518 | ||| || || || ||||| ||| |||| | ||||| || ||||| | ||| || Sbjct 2278 AGATCAACCTCCTCAACAGTCCAGAAAGAAGCCTCCGCCTTCTTGTACATCTGCCAGATC 2219 Query 17519 TCATTGTATTGTATGGGGAATA 17540 || | |||||| || ||||||| Sbjct 2218 TCCTGGTATTGGATAGGGAATA 2197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517257812299800