Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq44045 246 4e-60 seq39701 212 7e-50 >seq44045 Length=9771 Score = 246 bits (272), Expect = 4e-60 Identities = 955/1482 (64%), Gaps = 39/1482 (3%) Strand=Plus/Minus Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 || || ||||| || || ||| ||| || | || |||| || | |||| ||| Sbjct 2634 TAGGTCTCGTAAGGACCCTCCCTCTTGGCAATCGCAATACTCTCCGTCACCGCACTGTAG 2575 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 || || || |||||||| | ||| || || | |||| || ||||||| ||||| Sbjct 2574 TAGATAGTCTCGAAGATGTGCTTGTTCAGCACGCGTGCATCGGGGCTATCGAATGGCAGG 2515 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 | | || ||||||||||| | ||||| ||||| | ||||||||||| || | | Sbjct 2514 CGCATCAAGATGAACGCGTCTGCAAGGCCTTGTACACCTAGACCGATAGGTCGGTGGCGC 2455 Query 53570 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGG 53629 || ||| | |||||||| || | ||| ||||| || | || || ||||| || || Sbjct 2454 TTGTTACTCTTCTCAGCTTCAGGCACAGGGTAATAGTTGACGTCGATGATTTTGTTTAGA 2395 Query 53630 TTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---------- 53676 || | || | ||| ||||| |||| || || | ||| || || Sbjct 2394 TTGCGCGTGGCTATTCTGGTGACC---TCCTCGAGCTTCACAAAGTCGAACTCGGGGCCG 2338 Query 53677 -TTG-TCCATC--TATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCT 53731 ||| ||| || | || || || | || || | || || |||||||| || || Sbjct 2337 TTTGCTCCGTCGGTCTTGACGTACTTAGGCAGGGCCAGGGACGCAAGATTACACACAGCC 2278 Query 53732 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 53791 || || | | | || | | |||||| ||| |||||| ||||||||||| Sbjct 2277 ACTTCGTCGGGGGAAGAGTACTCGACGATCTCACAGCACAGATTAGAGCACTTGATGGTG 2218 Query 53792 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTA 53851 || ||||| || || |||||||| ||| ||||||||||| || || ||| |||| || Sbjct 2217 CCCAAATTCTGCTGGTTACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTG 2158 Query 53852 CCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTA-TAGA 53910 || || || |||| | |||| ||| || ||| | | ||||| |||| | | Sbjct 2157 CCGGTCTCGGTCTGCGCCTCTAGAATGGCGAACCACAGCTGCTGTGCCTTGATTACTCGC 2098 Query 53911 TTTGTATCTCTTTTCTCTTTCGTA-TAGTG-TATACAATCGTTCAAACTCGTCTCCCCAA 53968 || | ||| || | ||||| | ||| |||| | || ||||||||| | |||||| Sbjct 2097 TTAGC-TCTACCCTCGCGCTCGTACTTGTGGTATAGA-TC-TTCAAACTCCTTTCCCCAG 2041 Query 53969 ACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT- 54027 |||| |||||| || || ||| || | | || |||||||||||| | | Sbjct 2040 ACATCGTCCAAGCCTGGTGCATCACTTGGTGAGAACAGACTCCACTCTCCGTCGGCTTCG 1981 Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 ||| |||| |||||| ||||| ||||| || | | || ||||| | | | Sbjct 1980 CAC-CGTTCCATAAATAGATCGTTGATCCACAGGCCGAAGAAAAGATCACGTGCGCGCAT 1922 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 ||||| ||||| ||||| || ||||| |||||| | | ||||| | ||||| || Sbjct 1921 CTCCTCTGAACCTGTGTTCTTCTTTAGATCCAGGAACTCAAAGATATCTGCGTGCCAGGG 1862 Query 54148 TTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 54207 || | ||| || | | ||||||| || ||||| || || || || | ||| | || Sbjct 1861 CTCTAGGTACATTGCAAATGCTCCAGGACGCTTGTTACCACCTTGGTCAACGTAGCGTGC 1802 Query 54208 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 54267 |||||| || | || | || ||| || | || || || || |||||||| || | Sbjct 1801 GGTGTTGTTGAATACACGCAGCATAGGCACAAGTCCGTTAGAGTTTCCATTGGTTCCAGC 1742 Query 54268 GATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATT 54325 ||| |||||| | ||| | || || || |||| | || || || || || | Sbjct 1741 GATGTAGCTTTCTTTGGATCTGATCTTGTGAACGTTGA--GTCCGATACCTCCGGCACTC 1684 Query 54326 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 54385 || ||||| | ||||| || | || | ||||| || || || || ||| Sbjct 1683 TTGGAGATCATCGCGCAGGTCTTCAGGGTGTTGTAGATACCTTCAATGGAGTCGTCCTCG 1624 Query 54386 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 54445 || | || || ||||| || | ||| |||| || || || || || || | |||| Sbjct 1623 ATTGTGAGAAGGAAACACGATGATAGCTGGGGACGTCTTGTGCCGGCGTTGAACAGGGTA 1564 Query 54446 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCT 54505 || |||||||| |||||||| | || || ||||| || || ||||| || Sbjct 1563 GGTGAAGCGTGTGTAAACCAACCCTGTGATAGGTTGTTGTATGTTTCAATAGCCCCATCG 1504 Query 54506 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 54565 || || ||| || || || |||||||| | |||||||||||||| ||| | Sbjct 1503 ATGTCGTCGCCATGGATACCCACACTCACACGCATAAGCATGTGCTGAGGTCGCTCAGCA 1444 Query 54566 ATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 54625 | || || | ||||| ||||||| | || || ||||| || || || || | | Sbjct 1443 ACTTTTCCGTCCAGACGCAGCAGGTAGGATCTCTCTAATGTTTTGAACCCGAAGTACTGG 1384 Query 54626 TATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACT 54685 || |||||| || ||||||| ||| | ||||||||||| || | | ||| Sbjct 1383 TAGTTAAAGTCACGATCGTAAACAATCGCCGAGTTGAGTTT---CTCAGAGTTGGCTCGC 1327 Query 54686 ACATCCATG--GTAATACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACA 54742 ||| | | | | | || || | | ||| ||||| | || || || || || Sbjct 1326 ACACGCTGGATGAACTCCTCGGAGACCAGAGGACTCTGTTTGTCGTTCTTGGGGTTAACG 1267 Query 54743 TAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTT 54802 ||| || ||||| ||||| || ||||| || | || |||||||| ||||| ||||| Sbjct 1266 TAGGTAGCCAAATCATTCATAACCTCACTGAACACCTTCTTTGTTTCCTTGTGCAGATTG 1207 Query 54803 GATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGT 54844 || | || || | || || || || || || || || ||| Sbjct 1206 GACATCGCAATGCGGGCAGCCAGGATAGCGTAGTCGGGGTGT 1165 >seq39701 Length=4095 Score = 212 bits (234), Expect = 7e-50 Identities = 398/580 (69%), Gaps = 5/580 (1%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 || ||| || || || ||||| || ||||| ||||| || || || || ||||| || || Sbjct 2777 CAGACAAGCAAAGTCACAGTGGAGTCCCTCATCTCTGCTGATCAACTCATTGGAGAAAGT 2718 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 ||||| |||||||| |||||||| || | |||||| || || ||||| || ||||| || Sbjct 2717 TAGTCCAGGCATTAGCCCACGCTTCTTCATCCAAAAGATCGAGGCAAAGGAGCCAGAGAA 2658 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT- 24309 || || || |||||||| || ||||| | | | || || ||| || | || | Sbjct 2657 AAAGATACCCTCTACTGCAGCGAAGGCTACCACACGCTCACCGAAACTGGAGGCATCGTC 2598 Query 24310 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 || |||||||| | ||||| |||||||| || || || ||| | |||||| ||||| Sbjct 2597 GTTGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGACGGCAGGGAGTGTCTCAATAGC 2538 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA-T 24426 ||||| || | | || ||| || | ||||| || || || | | | Sbjct 2537 GTTAAATAGGTTATCCTTCTCACGGGGGTCACGGATGTATGTCTCGAT-AAGCGTGGAGT 2479 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || || || ||||| |||||||| || || ||||||||||| || | ||||||| Sbjct 2478 ACATCTCAGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAAGCAACGTGCCTCGG 2419 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 || |||||||| | || || || | ||| || ||||| || || ||||||| Sbjct 2418 CGATTTGTACTTCACCGCTGAAGCGCTCGAGGAGATTCTCGTTCACAATACCATCACTGG 2359 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 24606 | || || || ||||| ||||| || || | ||| | | || || | || Sbjct 2358 CAGCGAAGAAAGCCAACACATGGGATAAGAAGTGGCGCTCGCCATCCTTAAGGTTCTCCC 2299 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | ||| | ||| ||| | ||| || || || || ||||| || || ||||| |||| Sbjct 2298 AGTCAGCTAGATCACGAGACAGATCAACCTCCTCAACAGTCCAGAAAGAAGCCTCCGCCT 2239 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 24706 | || ||||| | |||||| || || ||||| || || || Sbjct 2238 TCTTGTACATCTGCCAGATCTCCTGGTATTGGATAGGGAA 2199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593391453682800