Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq27769 105 6e-18 >seq27769 Length=1647 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||||||||||||||||||| |||||||| || |||| || || ||||||| | ||| Sbjct 575 TGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCTAATTGT 634 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || || | || |||| |||||| || || | ||||||||| || || || Sbjct 635 TTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGTATGCCTTCCTTATCTTGTATTTTA 694 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 |||||| | | | |||||||| | ||| |||| || || ||||| || || Sbjct 695 ACTTTCACATTATCTATAGTATCACTAGACTCGACATCCAACGTGATAGTCTTACCAGTG 754 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | ||| ||||| ||||| ||||| Sbjct 755 AGCGTCTTGACGAATATCTGCAT 777 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||||| | | || | ||| | ||| ||||| || || || |||||||| || Sbjct 779 CCACCTCGCAAACGTAAAACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCA 838 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || |||||||| || ||| | || |||| |||||| || ||| Sbjct 839 AGTGTGCGGCCATCTTCAAGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGGG 898 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||| ||||| | | | ||||||| || |||| Sbjct 899 ATTCCTTCCTTGTCTTGTATCTTGGCCTTCACATTATCAATCGTATCACTGGACTCCACA 958 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| || ||||| || |||| || || ||||| |||||||| || Sbjct 959 TCGAGGGTGATAGTCTTTCCAGTTAGTGTCTTCACAAAAATTTGCATGTT 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422030267556260