Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq39701 322 5e-83 seq37552 109 6e-19 >seq39701 Length=4095 Score = 322 bits (356), Expect = 5e-83 Identities = 554/799 (69%), Gaps = 14/799 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || || | || ||||| || || |||||| | ||||| || ||||||| ||| Sbjct 2160 GAGCCCCTCCTCAGAGAAAACCCTCGTCGCTTCGTGCTATTCCCTATCCAATACCAGGAG 2219 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| || |||||||| || ||| Sbjct 2220 ATCTGGCAGATGTACAAGAAGGCGGAGGCTTCTTTCTGGACTGTTGAGGAGGTTGATCTG 2279 Query 116696 TCCAAGGACACGAGC-GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || || | ||| ||||||||| | | || || ||||||||| ||| | || Sbjct 2280 TCTCGTGAT-CTAGCTGACTGGGAGAACCTTAAGGATGGCGAGCGCCACTTCTTATCCCA 2338 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||| |||| || ||||| ||||| || || || || ||||||||||| ||||||| || Sbjct 2339 TGTGTTGGCTTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAATCTCCTCGAGCGCTT 2398 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | || || || | |||||||| || ||||||||||| || ||||||||||| || Sbjct 2399 CAGCGGTGAAGTACAAATCGCCGAGGCACGTTGCTTCTACGGATTCCAGATCGCCATTGA 2458 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG---CTCTTCGGA 116931 |||| | ||||| || ||||| || || || ||||| || ||| | || | | || Sbjct 2459 GAACATCCACTCTGAGATGTACTCCACGCTTATCGAGACATACATCCGTGACCCCCGTGA 2518 Query 116932 GGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGA 116991 | || | || | || ||||| || ||||| | || |||||| | |||||||| Sbjct 2519 GAAGGATAACC---TATTTAACGCTATTGAGACACTCCCTGCCGTCAAGAAAAAGGCCGA 2575 Query 116992 GTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC---TTCGGCGAGCGCCTGGTGGC 117048 ||||| || |||||| || | || ||| || ||||| ||||| |||| || Sbjct 2576 CTGGGCCCTCAAGTGGATCAACGAC---GATGCCTCCAGTTTCGGTGAGCGTGTGGTAGC 2632 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 |||||| || || ||||| |||| || || ||| || ||| | || |||||| | || Sbjct 2633 CTTCGCTGCAGTAGAGGGTATCTTTTTCTCTGGCTCCTTTGCCTCGATCTTTTGGATGAA 2692 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || || || ||||| || || |||||| ||| ||| | ||| ||| || ||||| Sbjct 2693 GAAGCGTGGGCTAATGCCTGGACTAACTTTCTCCAATGAGTTGATCAGCAGAGATGAGGG 2752 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 || || || |||||||| ||| |||| | | || ||| | ||| ||||| | Sbjct 2753 ACTCCACTGTGACTTTGCTTGTCTGCTACACGACCACCTGGAACGTAAACCCAGCGCCGA 2812 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 ||| | | ||| | || || || |||||||| ||||| || || || Sbjct 2813 AGTCGTGAAGAGTATCATTGTAGATGCTGTTAAGATCGAGCAAGAATTCCTGACGGATGC 2872 Query 117289 GCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGT 117348 || || ||| ||| | ||| | ||| | | |||| || |||||||||||||| Sbjct 2873 CCTTCCCGTGGCTCTAATTGGAATGAATCACAAGCTTATGTGCCAGTACATCGAGTTCGT 2932 Query 117349 CGCCGACAGGCTGCTGCTC 117367 |||||| | || || ||| Sbjct 2933 GGCCGACCGCCTTCTACTC 2951 >seq37552 Length=3269 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || || |||||| | || |||||| | | Sbjct 3246 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCTTGGATGTCGAATCGAGT 3187 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || |||| || || |||||||||||| | || ||| Sbjct 3186 GATACCATCGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATCCCCCCTGATCAG 3127 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || || || ||||| || | || ||||| ||| |||||| Sbjct 3126 CAGCGTTTGATCTTCGCTGGAAAGCAACTGGAAGATGGACGTACCCTGGCCGATTACAAC 3067 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||||||| | || || || || |||||||| Sbjct 3066 ATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCG 3032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514932705923600