Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq37552 129 5e-25 seq27769 104 2e-17 seq753 87.8 2e-12 >seq37552 Length=3269 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | | |||||| | ||| | |||||||| || ||||||||||||||| Sbjct 3018 TACCTCCGCGGAGACGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCGG 3077 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || || || ||||||||| |||| | |||||||||||| || | Sbjct 3078 CCAGGGTACGTCCATCTTCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGGG 3137 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||| || ||| || || || | |||| ||| || | |||| Sbjct 3138 GGATGCCCTCCTTATCCTGAATCTTAGCCTTCACATTATCGATGGTATCACTCGATTCGA 3197 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | || || || || ||||| || ||||| |||||||| Sbjct 3198 CATCCAAGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3246 >seq27769 Length=1647 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || | ||||||||| || ||||| | || ||||| ||||| ||||| ||||| | Sbjct 551 CCGCCTCTTAATCTCAAAACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCC 610 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||||| | ||||| || ||| |||| || ||||||||||| || ||| Sbjct 611 AAAGTACGGCCGTCCTCTAATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGT 670 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| ||||| ||| ||||| ||| || | || | || || | |||||| Sbjct 671 ATGCCTTCCTTATCTTGTATTTTAACTTTCACATTATCTATAGTATCACTAGACTCGACA 730 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || || || || || || || |||||||| Sbjct 731 TCCAACGTGATAGTCTTACCAGTGAGCGTCTTGACGAATATCTGCAT 777 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || || || || || | ||||| ||| || |||||||| ||| Sbjct 809 GTTGACTCTTTCTGTATATTATAGTCAGCAAGTGTGCGGCCATCTTCAAGCTGTTTACCA 868 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || |||||||||||||| || || || ||||||||| || || || Sbjct 869 GCAAAGATCAGTCGCTGCTGATCGGGGGGGATTCCTTCCTTGTCTTGTATCTTGGCCTTC 928 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || || || ||| || |||| ||| | || || || || || || Sbjct 929 ACATTATCAATCGTATCACTGGACTCCACATCGAGGGTGATAGTCTTTCCAGTTAGTGTC 988 Query 118722 TTTACAAAAATCTGCATG 118739 || |||||||| |||||| Sbjct 989 TTCACAAAAATTTGCATG 1006 >seq753 Length=412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587 ||||| || | ||| ||||| || ||||| ||||| ||| ||||| ||| ||| | Sbjct 181 ACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGGC--TAGTGTACGTCCATCTT 238 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | | ||| |||||||| | || | |||||||||||| ||||| || |||||||| || Sbjct 239 CCAACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAGGGATACCCTCCTTATCCT 298 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||| || || | |||| || || | || || || | ||| | || | Sbjct 299 GGATTTTAGCCTTCACATTATCGATAGTATCGCTAGATTCAACATCCAGGGTGATTGTCT 358 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || ||||| || ||||| |||||||| Sbjct 359 TTCCAGTGAGAGTCTTGACAAAGATCTGCAT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433595194103620