Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq37552 98.7 8e-16 seq753 98.7 8e-16 >seq37552 Length=3269 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||| ||| ||| || | || |||||||| ||||| ||||| Sbjct 3055 CTCCTTCTGAATGTTGTAATCGGCCAGGGTACGTCCATCTTCCAGTTGCTTTCCAGCGAA 3114 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| || || || || | |||||||| ||| ||| || ||| || Sbjct 3115 GATCAAACGCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGAATCTTAGCCTTCACATT 3174 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | || | || || |||| ||| || ||||| || || |||||||| || Sbjct 3175 ATCGATGGTATCACTCGATTCGACATCCAAGGTGATTGTCTTTCCAGTGAGAGTCTTGAC 3234 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 3235 AAAGATCTGCAT 3246 >seq753 Length=412 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | || || | ||||| ||||| || |||||||||||| ||||||||| Sbjct 163 CCACCACGCAGTCGAAGAACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGGCT 222 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| || | || |||| || ||||| || || || || ||||| || || ||||| Sbjct 223 AGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAGGG 282 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||| ||| ||||| ||| || | | | || | | || || Sbjct 283 ATACCCTCCTTATCCTGGATTTTAGCCTTCACATTATCGATAGTATCGCTAGATTCAACA 342 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || || |||||||| |||||||| ||||| Sbjct 343 TCCAGGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394861005659185