Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq44045 291 7e-74 seq39701 178 1e-39 seq753 96.9 3e-15 seq43136 87.8 2e-12 >seq44045 Length=9771 Score = 291 bits (322), Expect = 7e-74 Identities = 1011/1570 (64%), Gaps = 49/1570 (3%) Strand=Plus/Minus Query 22436 TCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAA 22495 || || | |||||| |||| || | || ||||| || || | || || ||| ||| Sbjct 2898 TCCTTCAGCAGATGCTGGTTGACAATCTGGAACTCTCCTGAGAGCACACGACGTGTGTAG 2839 Query 22496 ATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCG 22555 ||||| |||||| | || || | || || || ||||| |||||||| || |||| Sbjct 2838 ATGTTCGATGTGTAGGGCTCTATGCTCTCGTTATTACCCAGAATCTGAGCTGTGCTAGCG 2779 Query 22556 GTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTG 22615 || ||||| || || | || || || ||||| | |||| | || | |||| Sbjct 2778 GTAGGCATAGGGGCGACCAAAAGTGAATTTCTGAGTCCGTATAAAGCCATATCCTCCTTG 2719 Query 22616 AGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAAC 22675 | | | | ||| || ||| || || |||| ||||||||||| | ||||| Sbjct 2718 ACCTTAGCCCAATCGTGTCTATCCGAGGGGACAACAT---CCCACATATCGAACTGCAAG 2662 Query 22676 ACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGT 22735 | || ||||| ||| || |||| || ||||| ||||| | || ||||| Sbjct 2661 ATACCCTTGCTCGCTGGGGAACCAGCGTAGGTCTCGTAAGGACCCTCCCTCTTGGCAA-- 2604 Query 22736 TCGCAG--CTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATT 22793 ||||| ||| || || ||| | ||| || |||||||||||||| | |||||||| Sbjct 2603 TCGCAATACTCTCCGTCACCGCACTGTAGTAGATAGTCTCGAAGATGTGCTTGTTCAGCA 2544 Query 22794 CGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCT 22853 || || || ||| ||| | |||| ||||||| | ||||||||| || | || | Sbjct 2543 CGCGTGCATCGGGGCTATCGAATGGCAGGCGCATCAAGATGAACGCGTCTGCAAGGCCTT 2484 Query 22854 GAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTT--GCCTCGGGCAAAGG 22911 | || |||| |||||| ||||||| | || || ||| | || || |||| ||| Sbjct 2483 GTACACCTAGACCGATAGGTCGGTGGCGCTTGTT--ACTCTTCTCAGCTTCAGGCACAGG 2426 Query 22912 ATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNN 22971 || | || ||||| || |||| | || | || | ||| | || | Sbjct 2425 GTAATAGTTGACGTCGATGATTTTGTTTAGATTGCGCGTGGCTATTCTGGTGACCTCCTC 2366 Query 22972 NNNNNNNTCAAAGTCGTAAACGC--CCGATTGTACA----------ACAAACTTGTTGAC 23019 |||||||| | || ||| ||| | || |||| | Sbjct 2365 GAGCTTCACAAAGTCGAACTCGGGGCCGTTTGCTCCGTCGGTCTTGACGTACTTAGGCAG 2306 Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 ||| | || |||||||| || || ||||| ||||| ||| | |||||| || || || Sbjct 2305 GGCCAGGGACGCAAGATTACACACAGCCACTTCGTCGGGGGAAGAGTACTCGACGATCTC 2246 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 || ||||| ||||| || ||||||||||| |||||| || || || ||||| Sbjct 2245 ACAGCACAGATTAGAGCACTTGATGGTGCCCAAATTCTGCTGGTTACTCTTGCGGTTGCA 2186 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 || ||||||||| |||||||| || ||||| |||||| ||||| ||| | || || Sbjct 2185 CGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCGGTCTGCGCCTCTAGAATGGCGAA 2126 Query 23200 CCACATAGTCTGAG-CGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGT 23258 ||||| ||| | | ||| || |||| || || || ||||||||| |||| Sbjct 2125 CCACAGCTGCTGTGCCTTGATTAC-TCGCTTAGCTCTACCCTCGCGCTCGTACTTGTGGT 2067 Query 23259 ACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATC----GG 23313 | | | ||||| || || | ||| ||| ||| ||| || |||||| || Sbjct 2066 ATAGATCTTCAAACTCCTTTCCCCAGACA-TCGTCCAAGCCTGG----TGCATCACTTGG 2012 Query 23314 ACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCA 23373 | | ||||||||| | ||| ||| ||| |||||| ||||| ||||| Sbjct 2011 TGAGAACAGACTCCACTCTCCGTCGGCTTCGCACCGTTCCATAAATAGATCGTTGATCCA 1952 Query 23374 TAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATC 23433 || || |||| || || || ||||||| ||||||| || |||||||| || | ||| Sbjct 1951 CAGGCCGAAGAAAAGATCACGTGCGCGCATCTCCTCTGAACCTGTGTTCTTCTTTAGATC 1892 Query 23434 CAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCT 23493 || || || || | || || ||||| ||||| ||||| | ||||| || || || | Sbjct 1891 CAGGAACTCAAAGATATCTGCGTGCCAGGGCTCTAGGTACATTGCAAATGCTCCAGGACG 1832 Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 ||| || || || || || ||||| || || ||||||||| | || | ||||| ||||| Sbjct 1831 CTTGTTACCACCTTGGTCAACGTAGCGTGCGGTGTTGTTGAATACACGCAGCATAGGCAC 1772 Query 23554 GAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAAC---CTTTTGCTCGAACGTT 23610 || ||||| || || || || | | | | |||| | || | || Sbjct 1771 AAGTCCGTTAGAGTTTCCATTGGTTCCAGCGA---TGTAGCTTTCTTTGGATCTGATCTT 1715 Query 23611 GTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGT 23670 |||||||| || || || |||||| | || || ||||||||||| ||||| || Sbjct 1714 GTGAACGTTGAGTCCGATACCTCCGGCACTCTTGGAGATCATCGCGCAGGTCTTCAGGGT 1655 Query 23671 GTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG 23730 || |||||| || || ||| ||| || | | | | || | ||||||||| || | || Sbjct 1654 GTTGTAGATACCTTCAATGGAGTCGTCCTCGATTGTGAGAAGGAAACACGATGATAGCTG 1595 Query 23731 ----CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCAT 23786 || ||| || |||| |||||| || || ||||| ||||| | || | Sbjct 1594 GGGACGTCTTGTGC----CGGCGTTGAACAGGGTAGGTGAAGCGTGTGTAAACCAACCCT 1539 Query 23787 TCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGG 23846 || | ||||| || || || || |||| ||||| || || || ||||| | Sbjct 1538 GTGATAGGTTGTTGTATGTTTCAATAGCCCCATCGATGTCGTCGCCATGGATACCCACAC 1479 Query 23847 CGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGAT 23906 || ||||| | ||||| ||||||| ||| | |||| | | ||| | Sbjct 1478 TCACACGCATAAGCATGTGCTGAGGTCGCTCAGCAACTTTTCCGTCCAGACGCAGCAGGT 1419 Query 23907 ATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTA 23966 | || | | | ||||| || || || || | ||||||||||||||||||| || | Sbjct 1418 AGGATCTCTCTAATGTTTTGAACCCGAAGTACTGGTAGTTAAAGTCACGATCGTAAACAA 1359 Query 23967 TGGCCGAATT 23976 | ||||| || Sbjct 1358 TCGCCGAGTT 1349 >seq39701 Length=4095 Score = 178 bits (196), Expect = 1e-39 Identities = 512/783 (65%), Gaps = 10/783 (1%) Strand=Plus/Plus Query 57524 AGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTA 57583 ||| || || ||| | || || | || || || |||| | || || ||| | ||||| Sbjct 2174 AGAAAACCCTCGTCGCTTCGTGCTATTCCCTATCCAATACCAGGAGATCTGGCAGATGTA 2233 Query 57584 CAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAG 57643 ||| ||||| || || || || ||||| || || || || || |||||| ||||| || Sbjct 2234 CAAGAAGGCGGAGGCTTCTTTCTGGACTGTTGAGGAGGTTGATCTGTCTCGTGATCT-AG 2292 Query 57644 C-GATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTT 57702 | || ||||| ||| || || ||| | | || | || |||||||| || | Sbjct 2293 CTGACTGGGAGAACCTTAAGGATGGCGAGCGCCACTTCTTATCCCATGTGTTGGCTTTCT 2352 Query 57703 TCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGC 57762 |||| || ||||||||||| ||||||||| | |||| | || ||||| | Sbjct 2353 TCGCTGCCAGTGATGGTATTGTGAACGAGAATCTCCTCGAGCGCTTCAGCGGTGAAGTAC 2412 Query 57763 AAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAG 57822 || | | ||||| | ||||| |||||||| || | |||||||| ||| | || || | Sbjct 2413 AAATCGCCGAGGCACGTTGCTTCTACGGATTCCAGATCGCCATTGAGAACATCCACTCTG 2472 Query 57823 AAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGT 57882 | ||||| || || ||||| || ||| | ||| | ||||| || || | Sbjct 2473 AGATGTACTCCACGCTTATCGAGACATACATCCGTGACCCCCGTGAGAAGGATAACCTAT 2532 Query 57883 TCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGA 57942 | ||||| || || ||| | || || || || ||||| || ||| | |||| |||| Sbjct 2533 TTAACGCTATTGAGACACTCCCTGCCGTCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGA 2592 Query 57943 TAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTA 58002 | || || | ||| |||| ||| | | | || ||||| || || || |||| Sbjct 2593 TCAACGACGATGCCTCCAGTTTCGGTGAGCGTGTGGTAGCCTTCGCTGCAGTAGAGGGTA 2652 Query 58003 TATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCG 58062 | || || || ||| |||||| | || |||||||||||||| || || || ||||| | Sbjct 2653 TCTTTTTCTCTGGCTCCTTTGCCTCGATCTTTTGGATGAAGAAGCGTGGGCTAATGCCTG 2712 Query 58063 GCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGT 58122 | || || || ||| |||||||| | || ||||| ||||| ||| ||||| | Sbjct 2713 GACTAACTTTCTCCAATGAGTTGATCAGCAGAGATGAGGGACTCCACTGTGACTTTGCTT 2772 Query 58123 GCCTAATGTACTCTCACATTGTCAATAAACCGA-CGCGGGATCGCATCTTGGACATTATC 58181 | || | || ||| | | |||||| | ||| | | || || | | |||| Sbjct 2773 GTCTGCTACACGACCACCTGGAACGTAAACCCAGCGCCGAA----GTCGTGAAGAGTATC 2828 Query 58182 A---CCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATG 58238 | || || || |||||| | || || | || || ||||| || ||||| | Sbjct 2829 ATTGTAGATGCTGTTAAGATCGAGCAAGAATTCCTGACGGATGCCCTTCCCGTGGCTCTA 2888 Query 58239 CTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298 | || ||||| | | | |||| ||||||| ||||| || |||||| | ||| | Sbjct 2889 ATTGGAATGAATCACAAGCTTATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTTCTA 2948 Query 58299 CTC 58301 ||| Sbjct 2949 CTC 2951 >seq753 Length=412 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || |||||| | || |||||| | | Sbjct 389 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCCTGGATGTTGAATCTAGC 330 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || | ||| ||| ||||| || | || || || ||| Sbjct 329 GATACTATCGATAATGTGAAGGCTAAAATCCAGGATAAGGAGGGTATCCCTCCTGATCAG 270 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||| |||| || ||||| || ||||||||||| | | | || | ||| || || Sbjct 269 CAGCGTTTAATTTTTGCTGGAAAGCAGTTGGAAGA-TGGACGTACACTAGCCGACTACAA 211 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || ||| |||| ||| ||||| | || |||| Sbjct 210 TATTCAGAAGGAGTCAACACTGCATTTGGTTCTTCGACTGCGTGGTGGTA 161 >seq43136 Length=7188 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/154 (73%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 |||||| | |||||| || | ||||| |||| |||||||||||| || || ||| | || Sbjct 4318 GTTCGCTGTCGTCGAGGGGCTGTTCTTCTCGGCCAGCTTTGCGGCCATTTTCTGGCTCAA 4377 Query 58043 GAAACGCGGCCTGATGCCC---GGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 | | ||||| || ||| || || || || | |||| || |||| || ||||| Sbjct 4378 GGACCGCGGGCTAATGGCCAAGGGGCTCGCGGTGTCCAACCAGCTGATCTCCACGGACGA 4437 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 ||| || || || || |||||||| || |||||| Sbjct 4438 GGGCCTGCACACGGACTTTGCGTGTCTCATGTAC 4471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445518526021200