Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq44045 269 3e-67 seq39701 212 8e-50 >seq44045 Length=9771 Score = 269 bits (298), Expect = 3e-67 Identities = 1114/1741 (64%), Gaps = 41/1741 (2%) Strand=Plus/Minus Query 62370 AGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62429 || |||||| |||| || | ||||| ||||| || | || | || ||||| || || Sbjct 2892 AGCAGATGCTGGTTGACAATCTGGAACTCTCCTGAGAGCACACGACGTGTGTAGATGTTC 2833 Query 62430 CTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62489 || || || || | ||| ||||| |||| ||| ||||| || || || ||| Sbjct 2832 GATGTGTAGGGCTCTATGCTCTCGTTATTACCCAGAATCTGAGCTGTGCTAGCGGTAGGC 2773 Query 62490 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGT 62549 ||||| || ||||| | |||||| || |||||| || | || || | | Sbjct 2772 ATAGGGGCGACCAAAAGTGAATTTCTGAGTCCGTATAAAGCCATATCCTCCTTGACCTTA 2713 Query 62550 TCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTA 62609 |||||| |||||| || |||||| | || | ||||| || Sbjct 2712 GCCCAATCGTGTCTATCCGAGGGGACAACATCCCACATATCGAACTGCAAGATACCCTTG 2653 Query 62610 CTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTC 62669 || || || || | || || || || || || ||| ||| || | | |||| Sbjct 2652 CTCGCTGGGGAACCAGCGTAGGTCTCGTAAGGACCCTCCCTCTTGGCAATCGCAATACTC 2593 Query 62670 GCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCC 62729 || | |||| ||| || || || || ||||| | ||| || || | |||| || Sbjct 2592 TCCGTCACCGCACTGTAGTAGATAGTCTCGAAGATGTGCTTGTTCAGCACGCGTGCATCG 2533 Query 62730 GGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATA 62789 |||||||| ||||| | | || |||||||| || | ||||| ||||| | | Sbjct 2532 GGGCTATCGAATGGCAGGCGCATCAAGATGAACGCGTCTGCAAGGCCTTGTACACCTAGA 2473 Query 62790 CCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATA 62849 |||||||||| || | ||| ||| | |||||||| || | ||| ||||| || | Sbjct 2472 CCGATAGGTCGGTGGCGCTTGTTACTCTTCTCAGCTTCAGGCACAGGGTAATAGTTGACG 2413 Query 62850 TCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGA 62906 || || ||||| || ||||| | || | ||| ||||| |||| || || | | Sbjct 2412 TCGATGATTTTGTTTAGATTGCGCGTGGCTATTCTGGTGACC---TCCTCGAGCTTCACA 2356 Query 62907 AAATCAAA-----------TCGC-CCATC--TATT-ACAAACATGTTCAATGCAACAGAT 62951 || || || | || || || | || || || | || || | || Sbjct 2355 AAGTCGAACTCGGGGCCGTTTGCTCCGTCGGTCTTGACGTACTTAGGCAGGGCCAGGGAC 2296 Query 62952 GCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 63011 || ||||||||||| || || || | | | || | | |||||| ||| ||| Sbjct 2295 GCAAGATTACACACAGCCACTTCGTCGGGGGAAGAGTACTCGACGATCTCACAGCACAGA 2236 Query 63012 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63071 ||| |||||||| || || ||||| || || |||||||| ||| ||||||||||| Sbjct 2235 TTAGAGCACTTGATGGTGCCCAAATTCTGCTGGTTACTCTTGCGGTTGCACGCATCCTTG 2176 Query 63072 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGAC 63130 || || ||| |||| || || || || |||| | |||| ||| || ||| | | | Sbjct 2175 TACAGCATGTATGGTGTGCCGGTCTCGGTCTGCGCCTCTAGAATGGCGAACCACAGCTGC 2116 Query 63131 TCGAGCCTTTATTA-TAGATTTGTATCTCCTTTCTCTTTCGTA--TAGAGTATACAATCG 63187 | | ||||| |||| | | || | ||| | || | ||||| | ||||| | || Sbjct 2115 T-GTGCCTTGATTACTCGCTTAGC-TCTACCCTCGCGCTCGTACTTGTGGTATAGA-TC- 2060 Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| ||||| | |||||| |||| |||||| | || ||| || | | || Sbjct 2059 TTCAAACTCCTTTCCCCAGACATCGTCCAAGCCTGGTGCATCACTTGGTGAGAACAGACT 2000 Query 63248 CCACTCTCCGTCATCCTTCAC-TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63306 |||||||||||| |||| | |||| |||||| ||||| ||||| || | | | Sbjct 1999 CCACTCTCCGTC-GGCTTCGCACCGTTCCATAAATAGATCGTTGATCCACAGGCCGAAGA 1941 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63366 | ||||| | || | ||||| ||||| ||||| || ||||| |||||| | | Sbjct 1940 AAAGATCACGTGCGCGCATCTCCTCTGAACCTGTGTTCTTCTTTAGATCCAGGAACTCAA 1881 Query 63367 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426 ||||| | ||||| || || | ||| || || | ||||||| || ||||| || | Sbjct 1880 AGATATCTGCGTGCCAGGGCTCTAGGTACATTGCAAATGCTCCAGGACGCTTGTTACCAC 1821 Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486 | || || | ||| | |||||||| || | || | || ||| || | || ||||| | Sbjct 1820 CTTGGTCAACGTAGCGTGCGGTGTTGTTGAATACACGCAGCATAGGCACAAGTCCGTTAG 1761 Query 63487 ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA--TTGATAG 63544 | | |||||||| || | ||| |||| | | ||| | || || || ||| || Sbjct 1760 AGTTTCCATTGGTTCCAGCGATGTAGCTTTCTTTGGATCTGATCTTGTGAACGTTG--AG 1703 Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 || || || || || | || ||||| | ||||| || | |||| ||||| || Sbjct 1702 TCCGATACCTCCGGCACTCTTGGAGATCATCGCGCAGGTCTTCAGGGTGTTGTAGATACC 1643 Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 ||| ||| || || || | || || ||||| || | ||| |||| | || Sbjct 1642 TTCAATGGAGTCGTCCTCGATTGTGAGAAGGAAACACGATGATAGCTGGGGACGTCTTGT 1583 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 || || || || | |||||| |||||||| |||||||| | || || ||||| Sbjct 1582 GCCGGCGTTGAACAGGGTAGGTGAAGCGTGTGTAAACCAACCCTGTGATAGGTTGTTGTA 1523 Query 63725 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63784 || |||||||| || || || ||| || || || |||||||| | ||| Sbjct 1522 TGTTTCAATAGCCCCATCGATGTCGTCGCCATGGATACCCACACTCACACGCATAAGCAT 1463 Query 63785 GTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 ||||||||||| ||| ||| ||| || | || || ||||||| | || || || Sbjct 1462 GTGCTGAGGTCGCTCAGCAACTTTTCCGTCCAGACGCAGCAGGTAGGATCTCTCTAATGT 1403 Query 63845 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTT 63904 ||| || || || || | ||| |||||| || ||||||| ||| |||| ||||| || Sbjct 1402 TTTGAACCCGAAGTACTGGTAGTTAAAGTCACGATCGTAAACAATCGCCGAGTTGAGTTT 1343 Query 63905 ATCCTTATATTTGTTAACTATATCCATG--GTAATACT-TGAAATAATCGGAGAATGTTT 63961 || | | ||| | | | | | | | || || | | ||| ||||| Sbjct 1342 ---CTCAGAGTTGGCTCGCACACGCTGGATGAACTCCTCGGAGACCAGAGGACTCTGTTT 1286 Query 63962 CCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 64021 | || || || ||||| ||| | ||||| | ||| || ||||| || | || || Sbjct 1285 GTCGTTCTTGGGGTTAACGTAGGTAGCCAAATCATTCATAACCTCACTGAACACCTTCTT 1226 Query 64022 tGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 |||||||||||| ||||| || || || || | ||| || || || || || || || || Sbjct 1225 TGTTTCCTTGTGCAGATTGGACATCGCAATGCGGGCAGCCAGGATAGCGTAGTCGGGGTG 1166 Query 64082 T 64082 | Sbjct 1165 T 1165 >seq39701 Length=4095 Score = 212 bits (234), Expect = 8e-50 Identities = 397/580 (68%), Gaps = 5/580 (1%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 || ||| || || || ||||| || ||||| ||||| || || || || || || || || Sbjct 2777 CAGACAAGCAAAGTCACAGTGGAGTCCCTCATCTCTGCTGATCAACTCATTGGAGAAAGT 2718 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||||| |||||||| |||||||| || | |||||| || || || || || || || || Sbjct 2717 TAGTCCAGGCATTAGCCCACGCTTCTTCATCCAAAAGATCGAGGCAAAGGAGCCAGAGAA 2658 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTC 33754 ||||| || ||||||||||| ||||| | | | ||| || ||| ||| ||| Sbjct 2657 AAAGATACCCTCTACTGCAGCGAAGGCTACCACACGCTCACCGAAACTGGAGGCATCGTC 2598 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 | |||||||| | ||||| |||||||| || || || ||| | || || || || Sbjct 2597 GTTGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGACGGCAGGGAGTGTCTCAATAGC 2538 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA-T 33873 ||||| || | | || ||| || | || || ||||| || | | | Sbjct 2537 GTTAAATAGGTTATCCTTCTCACGGGGGTCACGGATGTATGTCTCGAT-AAGCGTGGAGT 2479 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||| || || || ||||| |||||||| ||||| ||||||||||| || | ||||||| Sbjct 2478 ACATCTCAGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAAGCAACGTGCCTCGG 2419 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 || || ||||| | || || || | ||| || ||||| || |||||||||| Sbjct 2418 CGATTTGTACTTCACCGCTGAAGCGCTCGAGGAGATTCTCGTTCACAATACCATCACTGG 2359 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 | || || || ||||| ||||| || || | ||| | | || || | || Sbjct 2358 CAGCGAAGAAAGCCAACACATGGGATAAGAAGTGGCGCTCGCCATCCTTAAGGTTCTCCC 2299 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | ||| | ||| ||| | ||| || || || || ||||| || || ||||| |||| Sbjct 2298 AGTCAGCTAGATCACGAGACAGATCAACCTCCTCAACAGTCCAGAAAGAAGCCTCCGCCT 2239 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 | || ||||| | |||||| || || |||||||| ||||| Sbjct 2238 TCTTGTACATCTGCCAGATCTCCTGGTATTGGATAGGGAA 2199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629467382050800