Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq44045 239 6e-58 seq39701 217 2e-51 >seq44045 Length=9771 Score = 239 bits (264), Expect = 6e-58 Identities = 847/1305 (65%), Gaps = 35/1305 (3%) Strand=Plus/Minus Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 || || ||||| || || ||| ||| || | || |||| || | |||| ||| Sbjct 2634 TAGGTCTCGTAAGGACCCTCCCTCTTGGCAATCGCAATACTCTCCGTCACCGCACTGTAG 2575 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 || || || |||||||| | ||| || || | |||| || ||||||| ||||| Sbjct 2574 TAGATAGTCTCGAAGATGTGCTTGTTCAGCACGCGTGCATCGGGGCTATCGAATGGCAGG 2515 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | | || ||||||||||| | ||||| ||||| | ||||||||||| || | | Sbjct 2514 CGCATCAAGATGAACGCGTCTGCAAGGCCTTGTACACCTAGACCGATAGGTCGGTGGCGC 2455 Query 65601 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 65660 || ||| | |||||||| || | ||| ||||| || | || || ||||| || ||| Sbjct 2454 TTGTTACTCTTCTCAGCTTCAGGCACAGGGTAATAGTTGACGTCGATGATTTTGTTTAGA 2395 Query 65661 TTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---------- 65707 || | || | ||| ||||| |||| || || | ||| || || Sbjct 2394 TTGCGCGTGGCTATTCTGGTGACC---TCCTCGAGCTTCACAAAGTCGAACTCGGGGCCG 2338 Query 65708 -TCGCTCA-TC--TATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCT 65762 | |||| || | || || || | || || | || || |||||||| || || Sbjct 2337 TTTGCTCCGTCGGTCTTGACGTACTTAGGCAGGGCCAGGGACGCAAGATTACACACAGCC 2278 Query 65763 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 65822 || || | | | || | | |||||| ||| |||||| ||||||||||| Sbjct 2277 ACTTCGTCGGGGGAAGAGTACTCGACGATCTCACAGCACAGATTAGAGCACTTGATGGTG 2218 Query 65823 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 65882 || ||||| || || |||||||| ||| ||||||||||| || || ||| |||| || Sbjct 2217 CCCAAATTCTGCTGGTTACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTG 2158 Query 65883 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTA-TAG 65940 || || || |||| | |||| ||| || ||| | | || | ||||| |||| | | Sbjct 2157 CCGGTCTCGGTCTGCGCCTCTAGAATGGCGAACCACAGCTGCT-GTGCCTTGATTACTCG 2099 Query 65941 ATTTGTATCTCTTTTCTCTTTCGTA-TAGT-GTATACAATCGTTCGAACTCGTCTCCCCA 65998 || | ||| || | ||||| | || ||||| ||| ||| ||||| | |||||| Sbjct 2098 CTTAG-CTCTACCCTCGCGCTCGTACTTGTGGTATA-GATC-TTCAAACTCCTTTCCCCA 2042 Query 65999 AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 66058 |||| |||||| || || ||| || | | || |||||||||||| ||| Sbjct 2041 GACATCGTCCAAGCCTGGTGCATCACTTGGTGAGAACAGACTCCACTCTCCGTC-GGCTT 1983 Query 66059 CAC-TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTAT 66117 | | |||| |||||| ||||| ||||| || | | || | ||| | | | Sbjct 1982 CGCACCGTTCCATAAATAGATCGTTGATCCACAGGCCGAAGAAAAGATCACGTGCGCGCA 1923 Query 66118 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACG 66177 ||||| ||||| ||||| || ||||| |||||| | | ||||| ||||| | Sbjct 1922 TCTCCTCTGAACCTGTGTTCTTCTTTAGATCCAGGAACTCAAAGATATCTGCGTGCCAGG 1863 Query 66178 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 66237 | || | ||| || || | ||||||| || ||||| || || || || | ||| | | Sbjct 1862 GCTCTAGGTACATTGCAAATGCTCCAGGACGCTTGTTACCACCTTGGTCAACGTAGCGTG 1803 Query 66238 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGG 66297 ||||||| || | || | || ||| || | || || || || | |||||||| || | Sbjct 1802 CGGTGTTGTTGAATACACGCAGCATAGGCACAAGTCCGTTAGAGTTTCCATTGGTTCCAG 1743 Query 66298 AGATATAGCTTCCACTTGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCAT 66355 ||| |||||| | | | | || || || ||| || || || || || || | Sbjct 1742 CGATGTAGCTTTCTTTGGATCTGATCTTGTGAACGTTG--AGTCCGATACCTCCGGCACT 1685 Query 66356 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 66415 || ||||| | ||||| || | || | ||||| || || || || ||| Sbjct 1684 CTTGGAGATCATCGCGCAGGTCTTCAGGGTGTTGTAGATACCTTCAATGGAGTCGTCCTC 1625 Query 66416 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 66475 || | || || ||||| || | ||| |||| || || || || || || | ||| Sbjct 1624 GATTGTGAGAAGGAAACACGATGATAGCTGGGGACGTCTTGTGCCGGCGTTGAACAGGGT 1565 Query 66476 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 66535 ||| |||||||| |||||||| | || || ||||| || |||||||| || Sbjct 1564 AGGTGAAGCGTGTGTAAACCAACCCTGTGATAGGTTGTTGTATGTTTCAATAGCCCCATC 1505 Query 66536 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 66595 || || ||| || || || |||||||| | |||||||||||||| ||| | Sbjct 1504 GATGTCGTCGCCATGGATACCCACACTCACACGCATAAGCATGTGCTGAGGTCGCTCAGC 1445 Query 66596 GATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 66655 | || || | || || ||||||| | || || ||||| || || || || | Sbjct 1444 AACTTTTCCGTCCAGACGCAGCAGGTAGGATCTCTCTAATGTTTTGAACCCGAAGTACTG 1385 Query 66656 GTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 66700 ||| |||||| || ||||||| ||| ||||||||||||| || Sbjct 1384 GTAGTTAAAGTCACGATCGTAAACAATCGCCGAGTTGAGTTTCTC 1340 >seq39701 Length=4095 Score = 217 bits (240), Expect = 2e-51 Identities = 398/580 (69%), Gaps = 5/580 (1%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 || ||| || || || ||||| || ||||| ||||| || || || || ||||| || || Sbjct 2777 CAGACAAGCAAAGTCACAGTGGAGTCCCTCATCTCTGCTGATCAACTCATTGGAGAAAGT 2718 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273 ||||| |||||||| |||||||| || | |||||| || || ||||| || ||||| || Sbjct 2717 TAGTCCAGGCATTAGCCCACGCTTCTTCATCCAAAAGATCGAGGCAAAGGAGCCAGAGAA 2658 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTC 36330 || || || |||||||| || ||||| | | | ||| || ||| || || ||| Sbjct 2657 AAAGATACCCTCTACTGCAGCGAAGGCTACCACACGCTCACCGAAACTGGAGGCATCGTC 2598 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 | |||||||| | ||||| |||||||| || || || ||| | |||||| ||||| Sbjct 2597 GTTGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGACGGCAGGGAGTGTCTCAATAGC 2538 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA-T 36449 ||||| || | | || ||| || | ||||| || || || | | | Sbjct 2537 GTTAAATAGGTTATCCTTCTCACGGGGGTCACGGATGTATGTCTCGAT-AAGCGTGGAGT 2479 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 |||| || || || ||||| |||||||| || || ||||||||||| || | ||||||| Sbjct 2478 ACATCTCAGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAAGCAACGTGCCTCGG 2419 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 || |||||||| | || || || | ||| || ||||| || || ||||||| Sbjct 2418 CGATTTGTACTTCACCGCTGAAGCGCTCGAGGAGATTCTCGTTCACAATACCATCACTGG 2359 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCC 36629 | || || || ||||| ||||| || || | ||| | || || | || Sbjct 2358 CAGCGAAGAAAGCCAACACATGGGATAAGAAGTGGCGCTCGCCATCCTTAAGGTTCTCCC 2299 Query 36630 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | ||| | ||| ||| | ||| || || || || ||||| || || ||||| |||| Sbjct 2298 AGTCAGCTAGATCACGAGACAGATCAACCTCCTCAACAGTCCAGAAAGAAGCCTCCGCCT 2239 Query 36690 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 36729 | || ||||| | |||||| || || ||||| || || || Sbjct 2238 TCTTGTACATCTGCCAGATCTCCTGGTATTGGATAGGGAA 2199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657806814787400