Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq39701 98.7 7e-16 seq43714 84.2 2e-11 >seq39701 Length=4095 Score = 98.7 bits (108), Expect = 7e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 ||||| || || || || || || | || ||||| || ||||| | || || ||| || Sbjct 2631 GCCTTCGCTGCAGTAGAGGGTATCTTTTTCTCTGGCTCCTTTGCCTCGATCTTTTGGATG 2690 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| ||| ||| ||||| || | | || ||||| |||||||| ||| | || || Sbjct 2691 AAGAAGCGTGGGCTAATGCCTGGACTAACTTTCTCCAATGAGTTGATCAGCAGAGATGAG 2750 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCT 22898 || || |||||||||||||||||| |||| Sbjct 2751 GGACTCCACTGTGACTTTGCTTGTCTGCT 2779 >seq43714 Length=8446 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 33571 CCAGAGATGGGCGACAAGTT-TGCATCGTTCACGGCCCAGAAGGGCACGTGCGGCATGAT 33629 || ||| | ||||| ||||| ||| ||| |||| |||||| |||| ||| |||| Sbjct 7168 CCCGAGGTCGGCGATAAGTTCTGC-TCGCGATCGGCGCAGAAGAGCACCGTCGGACTGAT 7226 Query 33630 GTACGAC-CAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCA 33688 | | | || ||||||||| || |||||||||||||| |||||||||| || ||| Sbjct 7227 -TGTGTCGCACGAGGACATGCCCTTTACGGCCGACGGCGTCATCCCGGACCTCATCCTCA 7285 Query 33689 ACCCGCATGCGTTCCCCTCGCGCATGACG 33717 ||||| ||| | || |||||||||||| Sbjct 7286 ACCCGTGCGCGCTGCCGTCGCGCATGACG 7314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356040464057455