Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq44045 271 1e-67 seq39701 221 2e-52 >seq44045 Length=9771 Score = 271 bits (300), Expect = 1e-67 Identities = 1118/1744 (64%), Gaps = 47/1744 (3%) Strand=Plus/Minus Query 79042 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 79101 || |||||| | || || | || || ||||| || | || | || ||||| || || Sbjct 2892 AGCAGATGCTGGTTGACAATCTGGAACTCTCCTGAGAGCACACGACGTGTGTAGATGTTC 2833 Query 79102 CTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGC 79161 || || || || | || ||||| |||| ||| ||||| || || || ||| Sbjct 2832 GATGTGTAGGGCTCTATGCTCTCGTTATTACCCAGAATCTGAGCTGTGCTAGCGGTAGGC 2773 Query 79162 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGAT 79221 ||||| || ||||| | |||||| || |||||| | || | || || || | Sbjct 2772 ATAGGGGCGACCAAAAGTGAATTTCTGAGTCCGTATAAAGCCATATCCTCCTT--GACCT 2715 Query 79222 T--CCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGT 79279 | ||||||| ||| || |||||||||| ||| | ||| | || | ||||| | Sbjct 2714 TAGCCCAATCGTGTCTATCCGAGGGGACAACATCCCACATATCGAACTGCAAGATACCCT 2655 Query 79280 TACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAAC 79339 | || || || || | ||| || || ||||| || ||| | | ||| | || || Sbjct 2654 TGCTCGCTGGGGAACCAGCGTAGGTCTCGTAAGGACCCTCCCTCTTGGCAATCGCAATAC 2595 Query 79340 TCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 79399 || || | || | ||| || || || ||||| || | ||| || || | |||| | Sbjct 2594 TCTCCGTCACCGCACTGTAGTAGATAGTCTCGAAGATGTGCTTGTTCAGCACGCGTGCAT 2535 Query 79400 CTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAA 79459 | ||||||| ||||| | | || ||||||||||| | ||||| ||||| | Sbjct 2534 CGGGGCTATCGAATGGCAGGCGCATCAAGATGAACGCGTCTGCAAGGCCTTGTACACCTA 2475 Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 ||||||||||| || | ||| ||| | |||||||| || | ||| ||||| || | Sbjct 2474 GACCGATAGGTCGGTGGCGCTTGTTACTCTTCTCAGCTTCAGGCACAGGGTAATAGTTGA 2415 Query 79520 TATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 79576 || || ||||| || ||||| | || ||||| ||||| |||| || || | Sbjct 2414 CGTCGATGATTTTGTTTAGATTGCGCGTGGCTATTCTGGTGACC---TCCTCGAGCTTCA 2358 Query 79577 GAAAATCAAA-TCG-----------TCCATC--TATT-ACAAACATGTTCAACGCGACAG 79621 ||| || || ||| ||| || | || || || | || || | | Sbjct 2357 CAAAGTCGAACTCGGGGCCGTTTGCTCCGTCGGTCTTGACGTACTTAGGCAGGGCCAGGG 2298 Query 79622 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGA 79681 | || |||||||| || || || || | | | || | | || ||| ||| | Sbjct 2297 ACGCAAGATTACACACAGCCACTTCGTCGGGGGAAGAGTACTCGACGATCTCACAGCACA 2238 Query 79682 GGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 79741 | ||| ||||| ||||| || ||||| || || |||||||| ||| |||||||||| Sbjct 2237 GATTAGAGCACTTGATGGTGCCCAAATTCTGCTGGTTACTCTTGCGGTTGCACGCATCCT 2178 Query 79742 TATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CG 79800 | || || ||| | || || || || || |||| | |||| ||| || ||| | | Sbjct 2177 TGTACAGCATGTATGGTGTGCCGGTCTCGGTCTGCGCCTCTAGAATGGCGAACCACAGCT 2118 Query 79801 ACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTA-TTGT-GTATATAATC 79858 || | ||||| |||| ||| ||| || | ||||| |||| ||||| ||| Sbjct 2117 GCT-GTGCCTTGATTACTCGCTTAGCTCTACCCTCGCGCTCGTACTTGTGGTATA-GATC 2060 Query 79859 GTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCA---GGACACATCA 79915 ||| ||||| | |||||| |||||||| || || || | | ||| || | | || Sbjct 2059 -TTCAAACTCCTTTCCCCAGACATCGTCCAAGCCTGG---TGCATCACTTGGTGAGAACA 2004 Query 79916 ACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975 ||||||||| || | | |||| |||||| ||||| ||||| || | | Sbjct 2003 GACTCCACTCTCCGTCGGCTTCGCACCGTTCCATAAATAGATCGTTGATCCACAGGCCGA 1944 Query 79976 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 80035 || ||||| | | | |||||| ||||| ||||| || ||||| |||||| Sbjct 1943 AGAAAAGATCACGTGCGCGCATCTCCTCTGAACCTGTGTTCTTCTTTAGATCCAGGAACT 1884 Query 80036 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTC 80095 | | ||||| | ||||| || || | ||| || || | |||| || || ||||| | Sbjct 1883 CAAAGATATCTGCGTGCCAGGGCTCTAGGTACATTGCAAATGCTCCAGGACGCTTGTTAC 1824 Query 80096 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 80155 | || || || | ||| | |||||||| || | || | || ||| || | || || | Sbjct 1823 CACCTTGGTCAACGTAGCGTGCGGTGTTGTTGAATACACGCAGCATAGGCACAAGTCCGT 1764 Query 80156 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGA 80213 | || | |||||||| || | ||| |||||| | ||| | || || || ||| Sbjct 1763 TAGAGTTTCCATTGGTTCCAGCGATGTAGCTTTCTTTGGATCTGATCTTGTGAACGTTG- 1705 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || || || || || || | || ||||| | ||||| || | || | ||||| Sbjct 1704 -AGTCCGATACCTCCGGCACTCTTGGAGATCATCGCGCAGGTCTTCAGGGTGTTGTAGAT 1646 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 || || ||| || || || | || || ||||| || | ||| |||| || Sbjct 1645 ACCTTCAATGGAGTCGTCCTCGATTGTGAGAAGGAAACACGATGATAGCTGGGGACGTCT 1586 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || || || || || | |||||| |||||||| |||||||| | || || || Sbjct 1585 TGTGCCGGCGTTGAACAGGGTAGGTGAAGCGTGTGTAAACCAACCCTGTGATAGGTTGTT 1526 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || |||||||| || || || ||| || || || |||||||| | Sbjct 1525 GTATGTTTCAATAGCCCCATCGATGTCGTCGCCATGGATACCCACACTCACACGCATAAG 1466 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||||| ||| | | || | | || || ||| ||| | || || Sbjct 1465 CATGTGCTGAGGTCGCTCAGCAACTTTTCCGTCCAGACGCAGCAGGTAGGATCTCTCTAA 1406 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 ||||| || || || || | ||| |||||| || ||||||| ||| |||||||||| Sbjct 1405 TGTTTTGAACCCGAAGTACTGGTAGTTAAAGTCACGATCGTAAACAATCGCCGAGTTGAG 1346 Query 80574 TTTATCCTTATATTTGTTAACTACATCCATGGTGA--TACT-TGAAATAATCGGAGAATG 80630 ||| || | | ||| ||| | | ||| | || || | | ||| || Sbjct 1345 TTT---CTCAGAGTTGGCTCGCACACGCTGGATGAACTCCTCGGAGACCAGAGGACTCTG 1289 Query 80631 TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 80690 ||| | || || || ||||| ||| | ||||| | ||| || ||||| || | || Sbjct 1288 TTTGTCGTTCTTGGGGTTAACGTAGGTAGCCAAATCATTCATAACCTCACTGAACACCTT 1229 Query 80691 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGG 80750 |||||||||||||| ||||| || | || || | ||| || | || || || || || Sbjct 1228 CTTTGTTTCCTTGTGCAGATTGGACATCGCAATGCGGGCAGCCAGGATAGCGTAGTCGGG 1169 Query 80751 ATGT 80754 ||| Sbjct 1168 GTGT 1165 >seq39701 Length=4095 Score = 221 bits (244), Expect = 2e-52 Identities = 400/580 (69%), Gaps = 5/580 (1%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || ||| || || || ||||| || ||||| ||||| || || | || ||||| || || Sbjct 2777 CAGACAAGCAAAGTCACAGTGGAGTCCCTCATCTCTGCTGATCAACTCATTGGAGAAAGT 2718 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 ||||| |||||||| |||||||| || | |||||| || || ||||| || ||||| || Sbjct 2717 TAGTCCAGGCATTAGCCCACGCTTCTTCATCCAAAAGATCGAGGCAAAGGAGCCAGAGAA 2658 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT- 50134 ||||| || |||||||| || ||||| || | | ||| || |||||| | || | Sbjct 2657 AAAGATACCCTCTACTGCAGCGAAGGCTACCACACGCTCACCGAAACTGGAGGCATCGTC 2598 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| | ||||| |||||||| || || || ||| | || || || || Sbjct 2597 GTTGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGACGGCAGGGAGTGTCTCAATAGC 2538 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA-T 50251 ||||| || | | || ||| || | || || ||||| || | | | Sbjct 2537 GTTAAATAGGTTATCCTTCTCACGGGGGTCACGGATGTATGTCTCGAT-AAGCGTGGAGT 2479 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 |||| || || || ||||| |||||||| ||||| ||||||||||| || | ||||||| Sbjct 2478 ACATCTCAGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAAGCAACGTGCCTCGG 2419 Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371 || || ||||| | || || || | ||| || ||||| || || ||||||| Sbjct 2418 CGATTTGTACTTCACCGCTGAAGCGCTCGAGGAGATTCTCGTTCACAATACCATCACTGG 2359 Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCC 50431 | || || || ||||| ||||| || || || ||| | || || | || Sbjct 2358 CAGCGAAGAAAGCCAACACATGGGATAAGAAGTGGCGCTCGCCATCCTTAAGGTTCTCCC 2299 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | ||| | ||| ||| | ||| || || || || ||||| || || ||||| |||| Sbjct 2298 AGTCAGCTAGATCACGAGACAGATCAACCTCCTCAACAGTCCAGAAAGAAGCCTCCGCCT 2239 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 | || ||||| | |||||| || || |||||||| ||||| Sbjct 2238 TCTTGTACATCTGCCAGATCTCCTGGTATTGGATAGGGAA 2199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717869397655400