Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq39701 152 5e-32 >seq39701 Length=4095 Score = 152 bits (168), Expect = 5e-32 Identities = 365/549 (66%), Gaps = 6/549 (1%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||| ||||| || || ||||||||||| || || | || || || || |||| Sbjct 2774 ACAAGCAAAGTCACAGTGGAGTCCCTCATCTCTGCTGATCAACTCATTGGAGAAAGTTAG 2715 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 ||| ||||| | || || || || | |||||| || | ||||| || || || || || Sbjct 2714 TCCAGGCATTAGCCCACGCTTCTTCATCCAAAAGATCGAGGCAAAGGAGCCAGAGAAAAA 2655 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC-AAAC--GATGCTTTTTTGTT 14047 || ||||| |||||||| || |||| | || || || |||| || || | | ||| Sbjct 2654 GATACCCTCTACTGCAGCGAAGGCTACCACACGCTCACCGAAACTGGAGGCATCGTCGTT 2595 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 ||||| || ||||| || | ||||| || | | | ||| |||||||| Sbjct 2594 ---GATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGACGGCAGGGAGTGTCTCAATAGC 2538 Query 14108 ATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 ||||||| | |||||||| | |||||||| || ||||| | || Sbjct 2537 GTTAAATAGGTTATCCTTCTCACGGGGGTCACGGATGTATGTCTCGATAAGCGTGGAGTA 2478 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 ||| |||||||| ||||| || || || ||||| || || || ||||| | || || | Sbjct 2477 CATCTCAGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAAGCAACGTGCCTCGGC 2418 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||||||||| | || | ||| | ||| || || || ||||||||||| || Sbjct 2417 GATTTGTACTTCACCGCTGAAGCGCTCGAGGAGATTCTCGTTCACAATACCATCACTGGC 2358 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347 || || || ||||| | | | |||| |||| ||| || || || | ||| Sbjct 2357 AGCGAAGAAAGCCAACACATGGGATAAGAAGTGGCGCTCGCCATCCTTAAGGTTCTCCCA 2298 Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407 || | || ||| ||| ||||| || || ||||| ||||| ||| ||| | || || Sbjct 2297 GTCAGCTAGATCACGAGACAGATCAACCTCCTCAACAGTCCAGAAAGAAGCCTCCGCCTT 2238 Query 14408 TTTATACAT 14416 || ||||| Sbjct 2237 CTTGTACAT 2229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479461241249000