Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq44045 224 1e-53 seq39701 224 1e-53 >seq44045 Length=9771 Score = 224 bits (248), Expect = 1e-53 Identities = 914/1425 (64%), Gaps = 39/1425 (3%) Strand=Plus/Minus Query 71440 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGA 71499 || || || || ||||| || | ||| || || | |||| || |||||||| ||||| Sbjct 2577 TAGTAGATAGTCTCGAAGATGTGCTTGTTCAGCACGCGTGCATCGGGGCTATCGAATGGC 2518 Query 71500 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559 | | || ||||||||||| | ||||| || || | ||||||||||| ||| Sbjct 2517 AGGCGCATCAAGATGAACGCGTCTGCAAGGCCTTGTACACCTAGACCGATAGGTCGGTGG 2458 Query 71560 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619 | ||| ||| | |||||||| || | ||| ||||| || | || || ||||| || Sbjct 2457 CGCTTGTTACTCTTCTCAGCTTCAGGCACAGGGTAATAGTTGACGTCGATGATTTTGTTT 2398 Query 71620 AGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTC--- 71673 ||||| | || ||||| ||||| |||| || || | ||| || || ||| Sbjct 2397 AGATTGCGCGTGGCTATTCTGGTGACC---TCCTCGAGCTTCACAAAGTCGAA-CTCGGG 2342 Query 71674 ----------CCATC--TATT-ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAAC 71720 || || | || || || || ||| | || || |||||||| || Sbjct 2341 GCCGTTTGCTCCGTCGGTCTTGACGTACTTAGGCAGGGCCAGGGACGCAAGATTACACAC 2282 Query 71721 GGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGAT 71780 || || || | | | || | | || ||| ||| |||||| |||||||| Sbjct 2281 AGCCACTTCGTCGGGGGAAGAGTACTCGACGATCTCACAGCACAGATTAGAGCACTTGAT 2222 Query 71781 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGG 71840 ||| || ||||| || || |||||||| ||| ||||||||||| || || || | || Sbjct 2221 GGTGCCCAAATTCTGCTGGTTACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGG 2162 Query 71841 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTA 71899 || || || || |||| | |||| ||| || ||| | | || | ||||| |||| Sbjct 2161 TGTGCCGGTCTCGGTCTGCGCCTCTAGAATGGCGAACCACAGCTGCT-GTGCCTTGATTA 2103 Query 71900 TATTCTTGTATCTCTTTTCTCTTTCGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCC 71957 ||| ||| || | ||||| |||| ||||| ||| ||| ||||| | ||| Sbjct 2102 CTCGCTTAGCTCTACCCTCGCGCTCGTACTTGTGGTATA-GATC-TTCAAACTCCTTTCC 2045 Query 71958 CCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATC 72017 ||| ||| ||| || || || ||| | || | | || ||||||||| || | Sbjct 2044 CCAGACATCGTCCAAGCCTGGTGCATCACTTGGTGAGAACAGACTCCACTCTCCGTCGGC 1985 Query 72018 ATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 72077 | |||| |||||| ||||| ||||| || | | || ||||| | | | Sbjct 1984 TTCGCACCGTTCCATAAATAGATCGTTGATCCACAGGCCGAAGAAAAGATCACGTGCGCG 1925 Query 72078 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 72137 |||||| ||||| ||||| || ||||| |||||| | | ||||| | ||||| Sbjct 1924 CATCTCCTCTGAACCTGTGTTCTTCTTTAGATCCAGGAACTCAAAGATATCTGCGTGCCA 1865 Query 72138 CGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 72197 || || | ||| || || | |||| || || ||||| || || || || | ||| | Sbjct 1864 GGGCTCTAGGTACATTGCAAATGCTCCAGGACGCTTGTTACCACCTTGGTCAACGTAGCG 1805 Query 72198 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCC 72257 |||||||| || | || | || ||| || | || || || || |||||||| || Sbjct 1804 TGCGGTGTTGTTGAATACACGCAGCATAGGCACAAGTCCGTTAGAGTTTCCATTGGTTCC 1745 Query 72258 GGAGATATAGCTTCCACTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCC 72315 | ||| |||||| | ||| | || ||| || ||| || || || || || || Sbjct 1744 AGCGATGTAGCTTTCTTTGGATCTGATCTTGTGAACGTTG--AGTCCGATACCTCCGGCA 1687 Query 72316 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCC 72375 | || ||||| | ||||| || | || | ||||| || || || || ||| Sbjct 1686 CTCTTGGAGATCATCGCGCAGGTCTTCAGGGTGTTGTAGATACCTTCAATGGAGTCGTCC 1627 Query 72376 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 72435 || | || || ||||| || | ||| |||| || || || || || || | | Sbjct 1626 TCGATTGTGAGAAGGAAACACGATGATAGCTGGGGACGTCTTGTGCCGGCGTTGAACAGG 1567 Query 72436 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGAT 72495 ||||| |||||||| |||||||| | || || ||||| || |||||||| Sbjct 1566 GTAGGTGAAGCGTGTGTAAACCAACCCTGTGATAGGTTGTTGTATGTTTCAATAGCCCCA 1507 Query 72496 TCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || || ||| || || || |||||||| | ||| |||||||||| ||| Sbjct 1506 TCGATGTCGTCGCCATGGATACCCACACTCACACGCATAAGCATGTGCTGAGGTCGCTCA 1447 Query 72556 ACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 72615 | | || | | || || ||||||| | || || ||||| || || || || Sbjct 1446 GCAACTTTTCCGTCCAGACGCAGCAGGTAGGATCTCTCTAATGTTTTGAACCCGAAGTAC 1387 Query 72616 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTA 72675 | ||| |||||| || ||||||| ||| |||| |||||||| || | | ||| Sbjct 1386 TGGTAGTTAAAGTCACGATCGTAAACAATCGCCGAGTTGAGTTT---CTCAGAGTTGGCT 1330 Query 72676 ACTATATCCATGGTGA--TACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTA 72732 | | | | ||| | || || | | ||| ||||| | || || || ||| Sbjct 1329 CGCACACGCTGGATGAACTCCTCGGAGACCAGAGGACTCTGTTTGTCGTTCTTGGGGTTA 1270 Query 72733 ACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGA 72792 || ||| | ||||| | ||| || ||||| || | || |||||||||||||| ||| Sbjct 1269 ACGTAGGTAGCCAAATCATTCATAACCTCACTGAACACCTTCTTTGTTTCCTTGTGCAGA 1210 Query 72793 TTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGT 72837 || || | || || | ||| || || || || || || || ||| Sbjct 1209 TTGGACATCGCAATGCGGGCAGCCAGGATAGCGTAGTCGGGGTGT 1165 >seq39701 Length=4095 Score = 224 bits (248), Expect = 1e-53 Identities = 402/581 (69%), Gaps = 7/581 (1%) Strand=Plus/Minus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 || ||| || || || ||||| || ||||||||||| || || || || ||||| || || Sbjct 2777 CAGACAAGCAAAGTCACAGTGGAGTCCCTCATCTCTGCTGATCAACTCATTGGAGAAAGT 2718 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 ||||| |||||||| |||||||| || | |||||| || || ||||| || ||||| || Sbjct 2717 TAGTCCAGGCATTAGCCCACGCTTCTTCATCCAAAAGATCGAGGCAAAGGAGCCAGAGAA 2658 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTC 42237 ||||| || |||||||| || ||||| | | | ||| || ||| |||| ||| Sbjct 2657 AAAGATACCCTCTACTGCAGCGAAGGCTACCACACGCTCACCGAAACTGGAGGCATCGTC 2598 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | |||||||| | ||||| |||||||| || || || ||| | || || || || Sbjct 2597 GTTGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGACGGCAGGGAGTGTCTCAATAGC 2538 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA-T 42356 ||||| || | | || ||| || | ||||| ||||| || | | | Sbjct 2537 GTTAAATAGGTTATCCTTCTCACGGGGGTCACGGATGTATGTCTCGAT-AAGCGTGGAGT 2479 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 |||| || || || ||||| |||||||| ||||| ||||||||||| || | ||||||| Sbjct 2478 ACATCTCAGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAAGCAACGTGCCTCGG 2419 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 | |||||||| | || || || | ||| |||||||| || || ||||||| Sbjct 2418 CGATTTGTACTTCACCGCTGAAGCGCTCGAGGAGATTCTCGTTCACAATACCATCACTGG 2359 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA-TTTATTC 42535 | || || || ||||| ||||| || || | ||| || |||| || | | Sbjct 2358 CAGCGAAGAAAGCCAACACATGGGATAAGAAGTGGCGCTCG-CCATCCTTAAGGTTCTCC 2300 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || ||| | ||| ||| | ||| || || || || ||||| || || || || ||| Sbjct 2299 CAGTCAGCTAGATCACGAGACAGATCAACCTCCTCAACAGTCCAGAAAGAAGCCTCCGCC 2240 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 || || ||||| | |||||| || || ||||| || ||||| Sbjct 2239 TTCTTGTACATCTGCCAGATCTCCTGGTATTGGATAGGGAA 2199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670766004658600