Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq39701 176 7e-39 seq44045 89.7 8e-13 >seq39701 Length=4095 Score = 176 bits (194), Expect = 7e-39 Identities = 501/764 (66%), Gaps = 42/764 (5%) Strand=Plus/Plus Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069 || || || || ||| | |||||||| ||||| |||| || || ||||| || || ||| Sbjct 2211 TACCAGGAGATCTGGCAGATGTACAAGAAGGCGGAGGCTTCTTTCTGGACTGTTGAGGAG 2270 Query 125070 GTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG 125129 || |||||||| || || || ||||||| | | | || ||||| | Sbjct 2271 GTTGATCTGTCTCGTGATCTAGCTGACTGGGAGAACCTTAAGGATGGC---GAGCGCCAC 2327 Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189 || |||| || | ||||| ||||| || | | ||||| || || ||||| ||||| Sbjct 2328 TTCTTATCCCATGTGTTGGCTTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAATCTC 2387 Query 125190 TTGACACGATTCTCTCAAGAGTTGA----CCATTC-CAGAGGTGTCGTGCTTTTACGGAT 125244 | || ||| || | ||| | | || | |||| ||||| ||||||| Sbjct 2388 CTCGAGCGCTTC-----AGCGGTGAAGTACAAATCGCCGAGGCACGTTGCTTCTACGGAT 2442 Query 125245 TCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACA 125304 |||| ||| ||||||||| | ||||| || |||||||| || || || || | |||| Sbjct 2443 TCCAGATCGCCATTGAGAACATCCACTCTGAGATGTACTCCACGCTTATCGAGACATACA 2502 Query 125305 TTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT----GCCGTCT 125360 | || || || | || | | || |||||||| || || || | |||||| Sbjct 2503 TCCGTGACCCCCGTGAGAAGGATAACCTATTTAACGCTATTGAGACACTCCCTGCCGTCA 2562 Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 | | ||||||| | |||| | ||||||| | ||||| || | || Sbjct 2563 AGA----AAAAGGCCGACTGGGCCCTCAAGTGGATCAACGACGATGCCTCCAGTTTCGGT 2618 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || | |||| || ||||| || |||||||| ||||| || || || ||||| | Sbjct 2619 GAGCGTGTGGTAGCCTTCGCTGCAGTAGAGGGTATCTTTTTCTCTGGCTCCTTTGCCTCG 2678 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||||||| | |||||||| || || ||||| ||||| || | || ||||| || Sbjct 2679 ATCTTTTGGATGAAGAAGCGTGGGCTAATGCCTGGACTAACTTTCTCCAATGAGTTGATC 2738 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600 |||| ||||| || |||||||||||||| || | ||| | | | || | ||| Sbjct 2739 AGCAGAGATGAGGGACTCCACTGTGACTTTGC--TTGT-CTGCTACACGACCACCTG--- 2792 Query 125601 CCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAA------CATTGTAACCGATGCCGTG 125654 || | | | |||||| ||| ||| | || ||||||| ||||| || Sbjct 2793 ---GAACGTAAACCCAGCGCCGAA---GTCGTGAAGAGTATCATTGTA---GATGCTGTT 2843 Query 125655 AGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC 125714 | ||| || ||||| || || || || |||| || || | ||||| ||||| | Sbjct 2844 AAGATCGAGCAAGAATTCCTGACGGATGCCCTTCCCGTGGCTCTAATTGGAATGAATCAC 2903 Query 125715 AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 ||||| |||||| ||||||| ||||| ||||| || || || || Sbjct 2904 AAGCTTATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTTCT 2947 >seq44045 Length=9771 Score = 89.7 bits (98), Expect = 8e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 97209 GAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACG 97267 ||||| || || || ||||| || ||||||||| | ||| || ||||| || ||||| | Sbjct 2150 GAGACCGGCACACCATACATGCTGTACAAGGATGC-GTGCAACCGCAAGAGTAACCAGCA 2208 Query 97268 CCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCC 97327 | ||||||||||||||| |||| ||||||||| || || || |||||| | || || Sbjct 2209 GAATTTGGGCACCATCAAGTGCTCTAATCTGTGCTGTGAGATCGTCGAGTACTCTTCCCC 2268 Query 97328 GGACGA 97333 ||||| Sbjct 2269 CGACGA 2274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740647124768600