Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq753 159 8e-34 seq27769 149 1e-30 seq37552 134 3e-26 >seq753 Length=412 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||| || || ||||||||||| ||||| | ||| || | || || Sbjct 177 AAGAACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGGCTAGTGTACGTCCATC 236 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || |||||||||||||||| | ||| ||||||||||| || || || ||||| Sbjct 237 TTCCAACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAGGGATACCCTCCTTATC 296 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| || || || || ||||| || | |||||||||| ||| || || || || || || Sbjct 297 CTGGATTTTAGCCTTCACATTATCGATAGTATCGCTAGATTCAACATCCAGGGTGATTGT 356 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || ||||| |||||||| Sbjct 357 CTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 389 Score = 143 bits (158), Expect = 6e-29 Identities = 127/159 (80%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 104401 ACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTC 104460 ||| || || || || ||||| ||||| || || | ||| ||||| ||||| || ||||| Sbjct 3 ACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGGATACCTTC 62 Query 104461 TTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 |||||||||||||| || || || || || | |||||||| |||||| || || || Sbjct 63 CTTATCCTGAATCTTCGCCTTGACGTTATCAATTGTATCGCTGCTTTCTACATCAAGCGT 122 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||||||||||| ||||| ||||| |||||||| Sbjct 123 AATAGTCTTACCAGTAAGAGTTTTAACAAAGATCTGCAT 161 >seq27769 Length=1647 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || |||||||| ||||||||||||| || || | || ||||| Sbjct 797 ACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCAAGTGTGCGGCCATCTTCA 856 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || ||||| |||||||| || || | ||| ||||| || || |||||||| || || || Sbjct 857 AGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGGGATTCCTTCCTTGTCTTGT 916 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || ||||| || | ||||| || | || || || || || |||||||| Sbjct 917 ATCTTGGCCTTCACATTATCAATCGTATCACTGGACTCCACATCGAGGGTGATAGTCTTT 976 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| ||||| || ||||| || ||||| || Sbjct 977 CCAGTTAGTGTCTTCACAAAAATTTGCATGTT 1008 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| || | |||| || || || || || || || || ||||| |||| Sbjct 550 TCCGCCTCTTAATCTCAAAACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGC 609 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 | ||| | ||||| |||| |||||| || || || ||||| | ||| ||||| || || Sbjct 610 CAAAGTACGGCCGTCCTCTAATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGG 669 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 ||| ||||| ||||| || || || |||| ||||| |||| ||||| |||| || || Sbjct 670 TATGCCTTCCTTATCTTGTATTTTAACTTTCACATTATCTATAGTATCACTAGACTCGAC 729 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || |||||||||||||| || || || || ||||||||||| Sbjct 730 ATCCAACGTGATAGTCTTACCAGTGAGCGTCTTGACGAATATCTGCAT 777 >seq37552 Length=3269 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || || || | || || | || ||||| ||||| |||||| Sbjct 3050 GTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTACGTCCATCTTCCAGTTGCTTTCCA 3109 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| |||||||| || || || || |||||||||||||| || || Sbjct 3110 GCGAAGATCAAACGCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGAATCTTAGCCTTC 3169 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || | ||| || || | || || ||||| ||||| || || Sbjct 3170 ACATTATCGATGGTATCACTCGATTCGACATCCAAGGTGATTGTCTTTCCAGTGAGAGTC 3229 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 3230 TTGACAAAGATCTGCAT 3246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150742144290380