Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq753 89.7 4e-13 seq37552 87.8 2e-12 seq27769 82.4 6e-11 >seq753 Length=412 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || ||||| ||||| |||||| ||||| ||||| || || | | || | || ||| Sbjct 181 ACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGGCTAGTGTACGTCCATCTTCC 240 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | |||||| || | ||||||||||||||||||| || | || ||||| ||| Sbjct 241 AACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGG 300 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||| | | | || |||||| |||| || || | || || || || Sbjct 301 ATTTTAGCCTTCACATTATCGATAGTATCGCTAGATTCAACATCCAGGGTGATTGTCTTT 360 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || ||||| |||||||| Sbjct 361 CCAGTGAGAGTCTTGACAAAGATCTGCAT 389 >seq37552 Length=3269 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | ||||| | ||||| || |||||| |||||||||||||| || Sbjct 3019 ACCTCCGCGGAGACGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGC 3078 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | || ||||| ||||| || || | || |||||||||||||| || Sbjct 3079 CAGGGTACGTCCATCTTCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGGGG 3138 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||| ||| ||| || ||| | | | |||||||| | || || Sbjct 3139 GATGCCCTCCTTATCCTGAATCTTAGCCTTCACATTATCGATGGTATCACTCGATTCGAC 3198 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || || || || |||||||| || ||||| |||||||| Sbjct 3199 ATCCAAGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3246 >seq27769 Length=1647 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48509 AACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGC 48568 || || || ||||| || | ||| ||||||||| ||||| ||||||||||| || Sbjct 560 AATCTCAAAACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGG 619 Query 48569 TCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCC 48628 ||||||| | || ||||| || | |||| ||||||||||| || | | |||| Sbjct 620 CCGTCCTCTAATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGTATGCCTTCC 679 Query 48629 TTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTT 48688 || || ||||| || | | |||| ||||| ||||||| || | || Sbjct 680 TTATCTTGTATTTTAACTTTCACATTATCTATAGTATCACTAGACTCGACATCCAACGTG 739 Query 48689 ATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| ||||| || || || || |||||||| Sbjct 740 ATAGTCTTACCAGTGAGCGTCTTGACGAATATCTGCAT 777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421022814054485