Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq33653 188 1e-43 seq43563 176 7e-40 seq34714 174 2e-39 >seq33653 Length=2375 Score = 188 bits (208), Expect = 1e-43 Identities = 204/268 (76%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| | | || ||||| ||||| || || |||||||| ||||| Sbjct 719 GCCAAGCGTCACCGTAAGATTT-TACGTGATAATATCCAGGGTATTACCAAGCCCGCTAT 777 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || ||||||||| ||||||| | |||| ||||||| Sbjct 778 CCGTCGTCTGGCTCGCCGTGGCGGTGTCAAGCGTATCTCTGGTCTTATCTACGAAGAGAC 837 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| || ||| | ||||| ||| | | |||| ||| || | ||| ||||| Sbjct 838 CCGTGGTGTGTTAAAGGTTTTCCTAGAGAACATCATCCGTGACGCCGTTACCTACACCGA 897 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| || |||||||| ||| ||||||| | || || ||| | || || || || Sbjct 898 GCACGCTAAGCGCAAGACTGTGACCGCCATGGACGTTGTGTACGCACTCAAGCGCCAGGG 957 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| ||| ||||| Sbjct 958 CCGCACTCTGTACGGTTTCGGAGGTTAA 985 >seq43563 Length=8015 Score = 176 bits (194), Expect = 7e-40 Identities = 202/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | | |||| || ||||||||||| || || |||||||| ||||| Sbjct 4872 GCCAAGCGCCACCGTAAAA-TCTTACGTGATAACATCCAGGGTATTACCAAGCCCGCTAT 4930 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || || ||||| || |||||||| ||||||| | |||| ||||||| Sbjct 4931 TCGTCGTCTAGCACGCCGTGGAGGTGTCAAGCGCATCTCTGGTCTTATCTACGAAGAGAC 4990 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| || ||| | ||||| ||| | | |||| ||| || | ||| ||||| Sbjct 4991 CCGTGGTGTGTTAAAGGTATTCCTTGAGAACATCATCCGTGACGCGGTTACCTACACCGA 5050 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||||||||| || | |||||| ||||||| ||| | || |||||||| Sbjct 5051 GCACGCCAAGCGTAAGACTGTGACTGCTATGGATGTCGTCTACGCACTTAAGCGTCAAGG 5110 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || || || ||| |||||| Sbjct 5111 ACGCACTTTATACGGATTCGGAGGTTAAT 5139 >seq34714 Length=2565 Score = 174 bits (192), Expect = 2e-39 Identities = 201/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| | | || ||||||||||| || || || ||||| ||||| Sbjct 1672 GCCAAGCGTCACCGTAAGATTT-TACGCGATAACATCCAGGGTATTACTAAGCCCGCTAT 1614 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| ||||| || || |||||| |||| || | |||| ||||||| Sbjct 1613 CCGTCGTCTAGCTCGCCGTGGCGGTGTTAAGCGTATCTCCGGTCTTATCTACGAAGAGAC 1554 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| || ||| ||||||| ||| | | |||| ||| ||| | ||| ||||| Sbjct 1553 CCGTGGTGTGTTAAAGGTCTTCCTAGAGAACATCATCCGTGACGCTGTTACCTACACCGA 1494 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||| || | |||||| | ||||| || | || || ||||| Sbjct 1493 GCACGCCAAGCGCAAGACTGTAACTGCTATGGATGTTGTCTACGCCCTTAAGCGCCAAGG 1434 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 1433 CCGCACCCTATACGGATTCGGAGGTTAA 1406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79034527053105