Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11]
44,485 sequences; 85,494,527 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq33653 188 1e-43
seq43563 176 7e-40
seq34714 174 2e-39
>seq33653
Length=2375
Score = 188 bits (208), Expect = 1e-43
Identities = 204/268 (76%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | ||| | | || ||||| ||||| || || |||||||| |||||
Sbjct 719 GCCAAGCGTCACCGTAAGATTT-TACGTGATAATATCCAGGGTATTACCAAGCCCGCTAT 777
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||||||||||||| ||||| || ||||||||| ||||||| | |||| |||||||
Sbjct 778 CCGTCGTCTGGCTCGCCGTGGCGGTGTCAAGCGTATCTCTGGTCTTATCTACGAAGAGAC 837
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| || ||| | ||||| ||| | | |||| ||| || | ||| |||||
Sbjct 838 CCGTGGTGTGTTAAAGGTTTTCCTAGAGAACATCATCCGTGACGCCGTTACCTACACCGA 897
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||||| || |||||||| ||| ||||||| | || || ||| | || || || ||
Sbjct 898 GCACGCTAAGCGCAAGACTGTGACCGCCATGGACGTTGTGTACGCACTCAAGCGCCAGGG 957
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | || ||||| ||| |||||
Sbjct 958 CCGCACTCTGTACGGTTTCGGAGGTTAA 985
>seq43563
Length=8015
Score = 176 bits (194), Expect = 7e-40
Identities = 202/269 (75%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || || | | |||| || ||||||||||| || || |||||||| |||||
Sbjct 4872 GCCAAGCGCCACCGTAAAA-TCTTACGTGATAACATCCAGGGTATTACCAAGCCCGCTAT 4930
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||||| || || ||||| || |||||||| ||||||| | |||| |||||||
Sbjct 4931 TCGTCGTCTAGCACGCCGTGGAGGTGTCAAGCGCATCTCTGGTCTTATCTACGAAGAGAC 4990
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| || ||| | ||||| ||| | | |||| ||| || | ||| |||||
Sbjct 4991 CCGTGGTGTGTTAAAGGTATTCCTTGAGAACATCATCCGTGACGCGGTTACCTACACCGA 5050
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || ||||||||||| || | |||||| ||||||| ||| | || ||||||||
Sbjct 5051 GCACGCCAAGCGTAAGACTGTGACTGCTATGGATGTCGTCTACGCACTTAAGCGTCAAGG 5110
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700
|| | | || || || ||| ||||||
Sbjct 5111 ACGCACTTTATACGGATTCGGAGGTTAAT 5139
>seq34714
Length=2565
Score = 174 bits (192), Expect = 2e-39
Identities = 201/268 (75%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | ||| | | || ||||||||||| || || || ||||| |||||
Sbjct 1672 GCCAAGCGTCACCGTAAGATTT-TACGCGATAACATCCAGGGTATTACTAAGCCCGCTAT 1614
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||||||| ||||| ||||| || || |||||| |||| || | |||| |||||||
Sbjct 1613 CCGTCGTCTAGCTCGCCGTGGCGGTGTTAAGCGTATCTCCGGTCTTATCTACGAAGAGAC 1554
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| || ||| ||||||| ||| | | |||| ||| ||| | ||| |||||
Sbjct 1553 CCGTGGTGTGTTAAAGGTCTTCCTAGAGAACATCATCCGTGACGCTGTTACCTACACCGA 1494
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || |||||||| || | |||||| | ||||| || | || || |||||
Sbjct 1493 GCACGCCAAGCGCAAGACTGTAACTGCTATGGATGTTGTCTACGCCCTTAAGCGCCAAGG 1434
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | || || || ||| |||||
Sbjct 1433 CCGCACCCTATACGGATTCGGAGGTTAA 1406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79034527053105
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |