Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq44045 277 2e-69 seq39701 212 8e-50 >seq44045 Length=9771 Score = 277 bits (306), Expect = 2e-69 Identities = 964/1483 (65%), Gaps = 41/1483 (3%) Strand=Plus/Minus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || ||||| || || ||| ||| || | || |||| || | |||| ||| Sbjct 2634 TAGGTCTCGTAAGGACCCTCCCTCTTGGCAATCGCAATACTCTCCGTCACCGCACTGTAG 2575 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 || || || |||||||| | ||| || || | |||| || ||||||| ||||| Sbjct 2574 TAGATAGTCTCGAAGATGTGCTTGTTCAGCACGCGTGCATCGGGGCTATCGAATGGCAGG 2515 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 | | || |||||||| || | ||||| ||||| | ||||||||||| || | | Sbjct 2514 CGCATCAAGATGAACGCGTCTGCAAGGCCTTGTACACCTAGACCGATAGGTCGGTGGCGC 2455 Query 62757 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62816 || ||| | |||||||| || | ||| ||||| || | || || ||||| || ||| Sbjct 2454 TTGTTACTCTTCTCAGCTTCAGGCACAGGGTAATAGTTGACGTCGATGATTTTGTTTAGA 2395 Query 62817 TTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---------- 62863 || | || | ||| ||||| |||| || || | ||| || || Sbjct 2394 TTGCGCGTGGCTATTCTGGTGACC---TCCTCGAGCTTCACAAAGTCGAACTCGGGGCCG 2338 Query 62864 -TCGC-CCATC--TATT-ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCT 62918 | || || || | || || || | || ||| | || || |||||||| || || Sbjct 2337 TTTGCTCCGTCGGTCTTGACGTACTTAGGCAGGGCCAGGGACGCAAGATTACACACAGCC 2278 Query 62919 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 62978 || || | | | || | | |||||| ||| |||||| |||||||| || Sbjct 2277 ACTTCGTCGGGGGAAGAGTACTCGACGATCTCACAGCACAGATTAGAGCACTTGATGGTG 2218 Query 62979 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 63038 || ||||| || || |||||||| ||| ||||||||||| || || ||| |||| || Sbjct 2217 CCCAAATTCTGCTGGTTACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTG 2158 Query 63039 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTA-TAG 63096 || || || |||| | |||| ||| || ||| | | || | ||||| |||| | | Sbjct 2157 CCGGTCTCGGTCTGCGCCTCTAGAATGGCGAACCACAGCTGCT-GTGCCTTGATTACTCG 2099 Query 63097 ATTTGTATCTCCTTTCTCTTTCGTA-TAGT-GTATACAATCGTTCGAACTCGTCTCCCCA 63154 || | ||| | || | ||||| | || ||||| ||| ||| ||||| | |||||| Sbjct 2098 CTTAG-CTCTACCCTCGCGCTCGTACTTGTGGTATA-GATC-TTCAAACTCCTTTCCCCA 2042 Query 63155 AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 63214 |||| |||||| || || ||| || | | || |||||||||||| ||| Sbjct 2041 GACATCGTCCAAGCCTGGTGCATCACTTGGTGAGAACAGACTCCACTCTCCGTC-GGCTT 1983 Query 63215 CAC-TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 63273 | | |||| |||||| ||||| ||||| || | | || ||||| | | | Sbjct 1982 CGCACCGTTCCATAAATAGATCGTTGATCCACAGGCCGAAGAAAAGATCACGTGCGCGCA 1923 Query 63274 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63333 ||||| ||||| ||||| || ||||| |||||| | | ||||| | ||||| | Sbjct 1922 TCTCCTCTGAACCTGTGTTCTTCTTTAGATCCAGGAACTCAAAGATATCTGCGTGCCAGG 1863 Query 63334 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63393 | || | ||| || || | ||||||| || ||||| || || || || | ||| | | Sbjct 1862 GCTCTAGGTACATTGCAAATGCTCCAGGACGCTTGTTACCACCTTGGTCAACGTAGCGTG 1803 Query 63394 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGG 63453 ||||||| || | || | || ||| || | || ||||| || | |||||||| || | Sbjct 1802 CGGTGTTGTTGAATACACGCAGCATAGGCACAAGTCCGTTAGAGTTTCCATTGGTTCCAG 1743 Query 63454 AGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCAT 63511 ||| |||||| | ||| | || || || ||| || || || || || || | Sbjct 1742 CGATGTAGCTTTCTTTGGATCTGATCTTGTGAACGTTG--AGTCCGATACCTCCGGCACT 1685 Query 63512 TTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGAT 63571 || ||||| | ||||| || | |||| |||||||| || ||| || || Sbjct 1684 CTTGGAGATCATCGCGCAGGTCTTCAGGGTGTTGTAGATACCTTCAATGGAGTCGTCCTC 1625 Query 63572 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 63631 || | || || ||||| || | ||| |||| || || || || || || | ||| Sbjct 1624 GATTGTGAGAAGGAAACACGATGATAGCTGGGGACGTCTTGTGCCGGCGTTGAACAGGGT 1565 Query 63632 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63691 ||| |||||||| |||||||| | || || ||||| || |||||||| || Sbjct 1564 AGGTGAAGCGTGTGTAAACCAACCCTGTGATAGGTTGTTGTATGTTTCAATAGCCCCATC 1505 Query 63692 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63751 || || ||| || || || |||||||| | |||||||||||||| ||| | Sbjct 1504 GATGTCGTCGCCATGGATACCCACACTCACACGCATAAGCATGTGCTGAGGTCGCTCAGC 1445 Query 63752 GATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63811 | || || | || || ||||||| | || || ||||| || || || || | Sbjct 1444 AACTTTTCCGTCCAGACGCAGCAGGTAGGATCTCTCTAATGTTTTGAACCCGAAGTACTG 1385 Query 63812 GTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC 63871 ||| |||||| || ||||||| ||| ||||||||||||| || | | ||| Sbjct 1384 GTAGTTAAAGTCACGATCGTAAACAATCGCCGAGTTGAGTTT---CTCAGAGTTGGCTCG 1328 Query 63872 TATATCCATGGTGA--TACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 63928 | | | | ||| | || || | | ||| ||||| | || || || ||||| Sbjct 1327 CACACGCTGGATGAACTCCTCGGAGACCAGAGGACTCTGTTTGTCGTTCTTGGGGTTAAC 1268 Query 63929 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 63988 ||| | ||||| | ||| || ||||| || | || |||||||||||||| ||||| Sbjct 1267 GTAGGTAGCCAAATCATTCATAACCTCACTGAACACCTTCTTTGTTTCCTTGTGCAGATT 1208 Query 63989 TGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64031 || | || || | ||| || || || || || || || ||| Sbjct 1207 GGACATCGCAATGCGGGCAGCCAGGATAGCGTAGTCGGGGTGT 1165 >seq39701 Length=4095 Score = 212 bits (234), Expect = 8e-50 Identities = 397/580 (68%), Gaps = 5/580 (1%) Strand=Plus/Minus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 || ||| || || || ||||| || ||||| ||||| || || | || ||||| || || Sbjct 2777 CAGACAAGCAAAGTCACAGTGGAGTCCCTCATCTCTGCTGATCAACTCATTGGAGAAAGT 2718 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||||| |||||||| |||||||| || | |||||| || || || || || ||||| || Sbjct 2717 TAGTCCAGGCATTAGCCCACGCTTCTTCATCCAAAAGATCGAGGCAAAGGAGCCAGAGAA 2658 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTC 33476 ||||| || ||||||||||| ||||| | | | ||| || ||| ||| ||| Sbjct 2657 AAAGATACCCTCTACTGCAGCGAAGGCTACCACACGCTCACCGAAACTGGAGGCATCGTC 2598 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 | |||||||| | ||||| |||||||| || || || ||| | || || || || Sbjct 2597 GTTGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGACGGCAGGGAGTGTCTCAATAGC 2538 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA-T 33595 ||||| || | | || ||| || | || || ||||| || | | | Sbjct 2537 GTTAAATAGGTTATCCTTCTCACGGGGGTCACGGATGTATGTCTCGAT-AAGCGTGGAGT 2479 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 |||| || || || ||||| |||||||| ||||| ||||||||||| || | ||||||| Sbjct 2478 ACATCTCAGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAAGCAACGTGCCTCGG 2419 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715 || |||||||| | || || || | ||| || ||||| || || ||||||| Sbjct 2418 CGATTTGTACTTCACCGCTGAAGCGCTCGAGGAGATTCTCGTTCACAATACCATCACTGG 2359 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33775 | || || || ||||| ||||| || || | ||| | | || || | || Sbjct 2358 CAGCGAAGAAAGCCAACACATGGGATAAGAAGTGGCGCTCGCCATCCTTAAGGTTCTCCC 2299 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | ||| | ||| ||| | ||| || || || || ||||| || || ||||| |||| Sbjct 2298 AGTCAGCTAGATCACGAGACAGATCAACCTCCTCAACAGTCCAGAAAGAAGCCTCCGCCT 2239 Query 33836 TTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAA 33875 | || ||||| | |||||| || | |||||||| ||||| Sbjct 2238 TCTTGTACATCTGCCAGATCTCCTGGTATTGGATAGGGAA 2199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622600802422600