Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq37552 98.7 9e-16 seq753 98.7 9e-16 seq39701 93.3 4e-14 seq27769 93.3 4e-14 >seq37552 Length=3269 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||| ||| | || | || |||||||| ||||||||||||||| | Sbjct 3020 CCTCCGCGGAGACGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCC 3079 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || || ||||| || ||| |||| ||||||||||| || || ||| Sbjct 3080 AGGGTACGTCCATCTTCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGGGGG 3139 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || || ||| | | || | ||||| | || |||| Sbjct 3140 ATGCCCTCCTTATCCTGAATCTTAGCCTTCACATTATCGATGGTATCACTCGATTCGACA 3199 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || ||||| || || || |||||||| Sbjct 3200 TCCAAGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3246 >seq753 Length=412 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || ||||| | || |||||||| ||||| ||||| ||| Sbjct 163 CCACCACGCAGTCGAAGAACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGGCT 222 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | |||||| || || | |||||||||||||| || |||||| Sbjct 223 AGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAGGG 282 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || |||||| ||| | | || | ||||||| | || || | Sbjct 283 ATACCCTCCTTATCCTGGATTTTAGCCTTCACATTATCGATAGTATCGCTAGATTCAACA 342 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || ||||| || || || |||||||| Sbjct 343 TCCAGGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 389 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || || |||| | |||||||| ||||||||||| ||||| || Sbjct 7 TCCTCAAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGGATACCTTCCTTA 66 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || || ||| ||||| | || | |||||| || || | || | |||| Sbjct 67 TCCTGAATCTTCGCCTTGACGTTATCAATTGTATCGCTGCTTTCTACATCAAGCGTAATA 126 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| || |||||||| || || |||||||| Sbjct 127 GTCTTACCAGTAAGAGTTTTAACAAAGATCTGCAT 161 >seq39701 Length=4095 Score = 93.3 bits (102), Expect = 4e-14 Identities = 262/393 (67%), Gaps = 12/393 (3%) Strand=Plus/Plus Query 46098 CAAGAAAA---CCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGA 46154 |||||||| |||||||||| | |||||||||||| | || | | ||||| || Sbjct 2561 CAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCAACGACGATGCCTCCAGTTTCGGTGA 2620 Query 46155 GCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCAT 46214 |||| |||| ||||| || || ||||| ||||||| |||||| |||||| | || Sbjct 2621 GCGTGTGGTAGCCTTCGCTGCAGTAGAGGGTATCTTTTTCTCTGGCTCCTTTGCCTCGAT 2680 Query 46215 CTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATAT 46273 ||||| || || || | |||| | ||||| || || || || ||| ||| |||| Sbjct 2681 CTTTTGGATGAAGAAGCGTGGGC-TAATGCCTGGACTAACTTTCTCCAATGAGTTGATCA 2739 Query 46274 CGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACACTCGCGTGCAC 46332 | || ||||| || || |||||||| ||||| |||| | ||| | | || Sbjct 2740 GCAGAGATGAGGGACTCCACTGTGACTTTGCTTGTCTGCTACACGACCAC---CTGGAAC 2796 Query 46333 GACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAG 46392 | || | ||| |||| |||| ||| || | || || || || ||| | Sbjct 2797 GTAAACCCAGCG-CCGAAGTCGTGAAGAGTATCATTGTAGATGCTGTTAAGATCGAGCAA 2855 Query 46393 GAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAA-CGCACAGTCAATGTG 46451 || || | |||| || || |||| || || | || ||||| | || || ||||| Sbjct 2856 GAATTCCTGACGGATGCCCTTCCCGTGGCTCTAATTGGAATGAATCACA-AGCTTATGTG 2914 Query 46452 CGACTACATCGAGTTTGTAGCGGACCGACTGCT 46484 | | ||||||||||| || || ||||| || || Sbjct 2915 CCAGTACATCGAGTTCGTGGCCGACCGCCTTCT 2947 >seq27769 Length=1647 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 ||||| || | || ||||||||||| ||||| ||||| || || || ||||||| Sbjct 569 ACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCT 628 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | || || |||||| |||||| |||||||| || || || || ||||| || || Sbjct 629 AATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGTATGCCTTCCTTATCTTGT 688 Query 131146 ATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTA 131205 ||||| || | | || | |||||| | ||||||| || | || | || ||| Sbjct 689 ATTTTAACTTTCACATTATCTATAGTATCACTAGACTCGACATCCAACGTGATAGTCTTA 748 Query 131206 CCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || ||||| |||||||| Sbjct 749 CCAGTGAGCGTCTTGACGAATATCTGCAT 777 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||| | || | ||| | || ||||| || || || || || || Sbjct 779 CCACCTCGCAAACGTAAAACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCA 838 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||| || || || |||| | |||||||| || || ||| Sbjct 839 AGTGTGCGGCCATCTTCAAGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGGG 898 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| || || ||| | | || | ||||| ||||||| | Sbjct 899 ATTCCTTCCTTGTCTTGTATCTTGGCCTTCACATTATCAATCGTATCACTGGACTCCACA 958 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | || || || ||||| || || || ||||| |||||| Sbjct 959 TCGAGGGTGATAGTCTTTCCAGTTAGTGTCTTCACAAAAATTTGCATG 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471750331382400