Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq27769 125 5e-24 seq38148 113 3e-20 seq10978 104 2e-17 seq41479 100 2e-16 seq753 98.7 7e-16 >seq27769 Length=1647 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| || | ||| || || || | |||| ||||||||| || || ||||||| | Sbjct 551 CCGCCTCTTAATCTCAAAACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCC 610 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| |||| ||||||||||| || || || ||||| || || ||||| | || Sbjct 611 AAAGTACGGCCGTCCTCTAATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGT 670 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || || ||||| |||||||| | | |||||| | | || || Sbjct 671 ATGCCTTCCTTATCTTGTATTTTAACTTTCACATTATCTATAGTATCACTAGACTCGACA 730 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| ||||| || | || || |||||||||||||| Sbjct 731 TCCAACGTGATAGTCTTACCAGTGAGCGTCTTGACGAATATCTGCAT 777 >seq38148 Length=3463 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 3447 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTGTCGGTCTCGT 3388 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||| ||| Sbjct 3387 GGCAATATTTAGCTTTA 3371 >seq10978 Length=672 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 387 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 446 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 447 GCCAATATTTAGCTTTA 463 >seq41479 Length=5205 Score = 100 bits (110), Expect = 2e-16 Identities = 204/299 (68%), Gaps = 12/299 (4%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCC---GCGCATCTGCGCCAAGGTCGAGGGTAAGGGA 6251 || || |||||||| ||||| ||||| || ||| |||| |||||||| || ||||| Sbjct 4564 GATGCCTTCTACCGGTACAAGATGCCCAAGCTCAT-TGCG--AAGGTCGAAGGCAAGGGT 4508 Query 6252 AACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCT 6311 ||||||||||| ||||| |||| ||| ||| || | | ||||| || ||| | ||| Sbjct 4507 AACGGTATTAAGACCGTTATTGCCAATATGAGCGACATTGGAAAGGCTCTTGGAAGACCT 4448 Query 6312 GCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCAC 6371 | ||||||| || || | ||||| || || || || | ||||| || | ||| Sbjct 4447 CCATCCTACCCAACAAAGTGGTTCGGTTGTGAGCTCGGTTCACAGACTCATATGGATGCG 4388 Query 6372 AAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCA---AGCTGCAGGACTTA 6428 || | || | ||| || || ||| | || | ||| | || |||||||| | Sbjct 4387 AAGCATGAAAAGTACATTGTCAATGGAAAGTATGA---TGCGAAAGAGTTGCAGGACCTG 4331 Query 6429 CTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| ||||| |||| |||||| |||| |||||||| ||||| || || Sbjct 4330 CTTGATAAGTTTATCAAGAAGTATGTGCTCTGTCCATCGTGCGATAATCCGGAAACTGA 4272 >seq753 Length=412 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | |||||||| || || |||||| ||||||||||| || | Sbjct 161 TACCACCACGCAGTCGAAGAACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGG 220 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | |||| | || || || || ||||| ||||| |||| || || ||||| | | Sbjct 221 CTAGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAG 280 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || ||| ||||| ||||||||| | || |||||| | | ||||| Sbjct 281 GGATACCCTCCTTATCCTGGATTTTAGCCTTCACATTATCGATAGTATCGCTAGATTCAA 340 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || || | || || || || |||||||| Sbjct 341 CATCCAGGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334765604712035