Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11]
44,485 sequences; 85,494,527 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq27769 96.9 3e-15
seq753 95.1 1e-14
>seq27769
Length=1647
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| ||||| || ||||| | || ||||| | ||||| | || || ||||| |
Sbjct 777 ATGCAGATATTCGTCAAGACGCTCACTGGTAAGACTATCACGTTGGATGTCGAGTCTAGT 718
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| ||||| || |||| ||||| || || ||||| || ||||| || ||
Sbjct 717 GATACTATAGATAATGTGAAAGTTAAAATACAAGATAAGGAAGGCATACCACCAGATCAG 658
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || || || ||||||||||| || | || ||| ||| ||||| ||
Sbjct 657 CAGCGACTAATCTTCGCAGGTAAACAATTAGAGGACGGCCGTACTTTGGCTGATTATAAC 598
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
|| ||||| || ||||| | || ||||| | || ||||||| |||
Sbjct 597 ATCCAAAAGGAGTCCACTTTGCACTTAGTTTTGAGATTAAGAGGCGGA 550
>seq753
Length=412
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| | || || || | ||||| | || || || ||
Sbjct 389 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCCTGGATGTTGAATCTAGC 330
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| |||||||| ||||| |||||| || || || || || || ||||| ||
Sbjct 329 GATACTATCGATAATGTGAAGGCTAAAATCCAGGATAAGGAGGGTATCCCTCCTGATCAG 270
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | |||||||| || || || || ||||||| || || | | ||| ||||||
Sbjct 269 CAGCGTTTAATTTTTGCTGGAAAGCAGTTGGAAGATGGACGTACACTAGCCGACTACAAT 210
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || || || ||||| || ||
Sbjct 209 ATTCAGAAGGAGTCAACACTGCATTTGGTTCT 178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433093066485275
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |