Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq27769 122 7e-23 seq753 105 6e-18 seq44045 96.9 3e-15 seq37552 91.5 1e-13 >seq27769 Length=1647 Score = 122 bits (134), Expect = 7e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 22207 ACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAA 22266 || |||| ||| |||||||||||||| || || |||| || || || |||| || || Sbjct 1017 ACTTTTGAAAACATGCAAATTTTTGTGAAGACACTAACTGGAAAGACTATCACCCTCGAT 958 Query 22267 GTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATT 22326 ||||| ||| ||||| | || || | || || || ||||||||||| || || Sbjct 957 GTGGAGTCCAGTGATACGATTGATAATGTGAAGGCCAAGATACAAGACAAGGAAGGAATC 898 Query 22327 CCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTC 22386 || |||||||| || || || || ||||| || |||||| | || ||| |||||| | Sbjct 897 CCCCCCGATCAGCAGCGACTGATCTTTGCTGGTAAACAGCTTGAAGATGGCCGCACACTT 838 Query 22387 TCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | || || || || || ||||| || || | ||| | ||||| || ||||| || ||| Sbjct 837 GCTGACTATAATATACAGAAAGAGTCAACTCTTCATCTCGTTTTACGTTTGCGAGGTGGT 778 >seq753 Length=412 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || |||| || || || ||| | | | Sbjct 389 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCCTGGATGTTGAATCTAGC 330 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||| || || ||||||||||| || || ||||| Sbjct 329 GATACTATCGATAATGTGAAGGCTAAAATCCAGGATAAGGAGGGTATCCCTCCTGATCAG 270 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || ||||| || ||| || || | |||| ||||| Sbjct 269 CAGCGTTTAATTTTTGCTGGAAAGCAGTTGGAAGATGGACGTACACTAGCCGACTACAAT 210 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | ||||| ||| | ||| |||| || ||| Sbjct 209 ATTCAGAAGGAGTCAACACTGCATTTGGTTCTTCGACTGCGTGGTGGT 162 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||||||| | || ||||| || | || ||||| || |||| || | Sbjct 161 ATGCAGATCTTTGTTAAAACTCTTACTGGTAAGACTATTACGCTTGATGTAGAAAGCAGC 102 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || ||||| || ||||| ||||| || || ||||| Sbjct 101 GATACAATTGATAACGTCAAGGCGAAGATTCAGGATAAGGAAGGTATCCCTCCGGATCAG 42 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 || || || || |||||||| || ||| | |||||| Sbjct 41 CAGCGCCTGATCTTTGCCGGAAAGCAGCTTGAGGAT 6 >seq44045 Length=9771 Score = 96.9 bits (106), Expect = 3e-15 Identities = 323/500 (65%), Gaps = 7/500 (1%) Strand=Plus/Minus Query 129738 GTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATT 129797 ||||||||| || || ||||| |||| || ||||||||||||| || || || Sbjct 2260 GTACTCGACGATCTCACAGCACAGATTAGAGCACTTGATGGTGCCCAAATTCTGCTGGTT 2201 Query 129798 ACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGT 129857 ||| || |||||| ||||| ||||||| |||||| || ||||| || ||| |||| Sbjct 2200 ACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCGGTCTGCGC 2141 Query 129858 TTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGAT--CTGTCTTACAAATTTGCCACAT 129915 || | ||||| ||| | | |||||||| || |||| | | || Sbjct 2140 CTCTAGAATGGCGAACCACAGCTGCTGTGCCTTGATTACTCGCTTAGC--TCTACCCTCG 2083 Query 129916 TTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAACGGC 129975 |||||| || || | |||||| || || || ||| | || Sbjct 2082 CGCTCGTACTTGTGGTATAGATCTTCAAACTCCTTTCCCCAGACATCGTCCAAGCCTGGT 2023 Query 129976 GATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAA 130035 | |||| || | | || ||||||| ||| || |||||| |||| |||||| | | Sbjct 2022 GCATCACTTGGTGAGAACAGACTCCACTCTCCGTCGGCTTCGCACCGTTCCATAAATAGA 1963 Query 130036 TCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTA 130095 ||| | ||||||| || | || | ||| || || | ||||| | ||| |||| Sbjct 1962 TCGTTGATCCACAGGCCGAAGAAAAGATCACGTGCGCGCATCTCCTCTGAACCTGTGTTC 1903 Query 130096 CGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATT 130155 || || || ||||| || | || || |||||||| || || | || ||||| | | Sbjct 1902 TTCTTTAGATCCAGGAACTCAAAGATATCTGCGTGCCAGGGCTCTAGGTACATTGCAAAT 1843 Query 130156 GCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGC 130212 || || || ||| || ||||||||||||| ||| ||| |||||| | || ||| Sbjct 1842 GCTCCAGGACGCTTGTTACCACCTTGGTCAACGTAGCGTGCGGTGTTGTTGAATACACGC 1783 Query 130213 AACATTGCCTCCAATCCGTT 130232 | ||| | | | | |||||| Sbjct 1782 AGCATAGGCACAAGTCCGTT 1763 >seq37552 Length=3269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || |||| | || || ||| | | Sbjct 3246 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCTTGGATGTCGAATCGAGT 3187 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || ||||| || |||||||| || || || ||||| Sbjct 3186 GATACCATCGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATCCCCCCTGATCAG 3127 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || || | || ||| || ||| | ||||||||||| Sbjct 3126 CAGCGTTTGATCTTCGCTGGAAAGCAACTGGAAGATGGACGTACCCTGGCCGATTACAAC 3067 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | || | || ||||| | ||||||||| Sbjct 3066 ATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCGTCTCCGCGGAGGT 3019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419500439874025