Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq19443 86.0 1e-11 seq41911 84.2 4e-11 >seq19443 Length=1051 Score = 86.0 bits (94), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142497 TGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGG 142556 ||||| | ||||| ||||||||||||||||||| ||||||||||||| ||||| ||| Sbjct 71 TGAGAAATCCCGGCTAGCTCAGTCGGTAGAGCGTGAGACTCTTAATCTCAAGGTCGAGGG 12 Query 142557 TTCGAGCCCC 142566 |||||||||| Sbjct 11 TTCGAGCCCC 2 >seq41911 Length=5570 Score = 84.2 bits (92), Expect = 4e-11 Identities = 125/175 (71%), Gaps = 8/175 (5%) Strand=Plus/Minus Query 280185 AATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG---ACCCAGGCCACT 280241 || ||||| |||||||| ||| | ||||| | ||||||| ||| | || | | || Sbjct 1707 AACGGTGCCGGTAAGTCAACCATGATCAAGTTGTTGACTGGTGAGCTTATCCCCGACGCT 1648 Query 280242 G----AGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 | ||| | || ||||||||||| || | || || || ||||| || || ||||| Sbjct 1647 GGATCAGGTGAA-GTGTGGAAGCATCCTAATGTACGTATCGCATACGTTGCACAACACGC 1589 Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 |||||| || |||||| ||| |||| | ||| || ||| | ||||||| |||| Sbjct 1588 TTTCCATCATATCGAGTCTCACTTGGAAAAGACACCCAACGAGTACATTCGGTGG 1534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027250969961885