Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq37552 163 5e-35 seq37209 143 5e-29 seq27769 136 7e-27 seq37601 98.7 2e-15 seq30531 98.7 2e-15 >seq37552 Length=3269 Score = 163 bits (180), Expect = 5e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 ||||| |||||||| || ||||| || | ||| || || ||||| || || ||||| ||| Sbjct 3014 TAATTACCTCCGCGGAGACGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAA 3073 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 |||| || || | |||||||| | ||||| || ||||| || | | || || || Sbjct 3074 TCGGCCAGGGTACGTCCATCTTCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCA 3133 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || || ||||| ||||| || |||||||| ||||| || |||||||| || ||| Sbjct 3134 GGGGGGATGCCCTCCTTATCCTGAATCTTAGCCTTCACATTATCGATGGTATCACTCGAT 3193 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||||||||| || ||||| ||||| |||||||| || |||||||| Sbjct 3194 TCGACATCCAAGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3246 >seq37209 Length=3165 Score = 143 bits (158), Expect = 5e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| || || ||||||| || || || ||||| || || || |||||||| ||||| || Sbjct 2280 CTGTAGAATCCTCCACATAGCCTCTACGTAGTCACGGGCGTGACCCCAATCACGCTTGGC 2221 Query 268306 GTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCG 268365 ||||||||| || ||| | ||||| | ||| |||||| ||| | | || | |||| Sbjct 2220 GTCCATGTTTCCTAGGTATAGGCAGTCCTGTTTGCCGTACTTGATCTGGGCCACGGCGCG 2161 Query 268366 AGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGAT 268425 || || || || || ||||| ||||| ||||| | || |||||||||||| ||||| Sbjct 2160 GGTAATCTTGCGCGTGACGAAGGTCTCTCCACGACGGGGAGACTCGTGGTTGAACAGGAT 2101 Query 268426 GCCGTTGCACGCGAACATGCCATATGCCT 268454 |||||||| || |||||||| || |||| Sbjct 2100 ACCGTTGCAGGCAAACATGCCGTAAGCCT 2072 >seq27769 Length=1647 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| || ||||| | |||||||| ||||||||||||||||| | | || | || || Sbjct 565 CAAAACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTC 624 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||||| || || || ||||| || |||| || || || ||||| ||||||||||| || Sbjct 625 CTCTAATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGTATGCCTTCCTTATC 684 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| || || | || || || || || || || || || ||||| ||||| || Sbjct 685 TTGTATTTTAACTTTCACATTATCTATAGTATCACTAGACTCGACATCCAACGTGATAGT 744 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| |||||||||||||||||||| Sbjct 745 CTTACCAGTGAGCGTCTTGACGAATATCTGCAT 777 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || |||||||| || || ||||| || | ||||| | |||||||| | ||| Sbjct 803 TGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCAAGTGTGCGGCCATCTTCAAGCTGT 862 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || |||| || || ||||| || || |||||||||||||| ||||| Sbjct 863 TTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGGGATTCCTTCCTTGTCTTGTATCTTG 922 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| || || || || || || || || || | |||||| || ||||| || Sbjct 923 GCCTTCACATTATCAATCGTATCACTGGACTCCACATCGAGGGTGATAGTCTTTCCAGTT 982 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || ||||| || || || ||||| Sbjct 983 AGTGTCTTCACAAAAATTTGCAT 1005 >seq37601 Length=3285 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| || || |||||||| ||||||||||| | || || || Sbjct 1860 ATACCCTCCTTGTCTTGGATTTTAGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACG 1801 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| ||||| || ||||| |||||||| ||||| |||||||| Sbjct 1800 TCCAAGGTAATGGTCTTACCCGTTAGGGTCTTCACGAAAATCTGCAT 1754 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||| ||| || |||||||| || ||||||||||| |||| Sbjct 2438 CCACCACGAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGCT 2379 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| | |||||| |||||||| || || | || || || || || Sbjct 2378 AGTGTGCGTCCATCTTCCAGCTGCTTACCGGCGAAGATAAGACGCTGCTGATCAGGGGGG 2319 Query 68355 ATGCCT 68360 || ||| Sbjct 2318 ATACCT 2313 >seq30531 Length=1940 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| |||||||| ||||||||||| || || || Sbjct 497 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCACTGGACTCCACA 438 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| ||||| |||||||||||||||||||| |||||||| Sbjct 437 TCAAGTGTGATAGTTTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921109920344200