Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq44045 264 2e-65 seq39701 221 2e-52 >seq44045 Length=9771 Score = 264 bits (292), Expect = 2e-65 Identities = 755/1150 (66%), Gaps = 27/1150 (2%) Strand=Plus/Minus Query 244299 CCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGG 244358 ||||||| || ||||||| | |||||||| | ||| || |||||||| ||| | Sbjct 2681 CCCACATATCGAACTGCAAGATACCCTTGCTCGCTGGGGAACCAGCGTAGGTCTCGTAAG 2622 Query 244359 GACCGTCGCGCTGGGCCAGCTTACAGCTCTC-GTCGAGGGCGGCGTAGTAGATGGTCTCG 244417 |||| || | || ||| | | | ||||| ||| | || ||||||||| |||||| Sbjct 2621 GACCCTCCCTCTTGGCAATCGCAATACTCTCCGTC-ACCGCACTGTAGTAGATAGTCTCG 2563 Query 244418 AAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATG 244477 ||||| |||||||| |||| || | | || ||| || | || ||||| ||| Sbjct 2562 AAGATGTGCTTGTTCAGCACGCGTGCATCGGGGCTATCGAATGGCAGGCGCATCAAGATG 2503 Query 244478 AAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 || |||| || || || || || || | ||||| |||| ||| |||||||| | Sbjct 2502 AACGCGTCTGCAAGGCCTTGTACACCTAGACCGATAGGTCGGTGGCGCTTGTTACTCTTC 2443 Query 244538 ATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATC 244597 ||||| ||||| |||||| ||||| ||||||| | ||||| || ||||| ||| Sbjct 2442 TCAGCTTCAGGCACAGGGTAATAGTTGACGTCGATGATTTTGTTTAGATTGCGCGTGGCT 2383 Query 244598 ATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTG 244657 || | | ||| || | ||| | ||||||| ||||| || | | || | | Sbjct 2382 ATTCTGGTGACCTCCTCGAGCTTCACAAAGTCGAACTCG---GGGCCGTTTGCTCCGTCG 2326 Query 244658 ATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAG 244717 || | || ||| ||||| | | || || || || || ||||| || || | | Sbjct 2325 GTCTTGACGTACTTAGGCAGGGCCAGGGACGCAAGATTACACACAGCCACTTCGTCGGGG 2266 Query 244718 TTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGG 244777 | ||||| ||| ||||| ||| || ||| ||||||||||||||||| | ||| Sbjct 2265 GAAGAGTACTCGACGATCTCACAGCACAGATTAGAGCACTTGATGGTGCCCAAATTCTGC 2206 Query 244778 TGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGC 244837 || || |||| |||||| || |||||||| |||||| | || ||||||||| | Sbjct 2205 TGGTTACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCGGTC 2146 Query 244838 TGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCT-GCG-AGCCTTGC 244895 || || | || | | | ||| || | | ||||||| | || || ||| | | Sbjct 2145 TGCGCCTCTAGAATGGCGAACCACAGCTGCTGTGCCTTGAT--TACTCGCTTAGCTCTAC 2088 Query 244896 CCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGC 244955 |||| |||||| | ||| || | || ||||| |||||||| ||||| | || Sbjct 2087 CCTCGCGCTCGTACTTGTGGTATAGATCTTCAAACTCCTTTCCCCAGACATCGTCCAAGC 2028 Query 244956 CGGG-GCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATG 245014 | || ||| || | | | | ||||||||||| ||| || | | | || | ||| Sbjct 2027 CTGGTGCATCACTTGGTG-AGAACAGACTCCACTCTCCGTCGGCTTCGCACCGTTCCATA 1969 Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074 || || ||| |||||| ||| | ||| || || | | | | ||| || || || Sbjct 1968 AATAGATCGTTGATCCACAGGCCGAAGAAAAGATCACGTGCGCGCATCTCCTCTGAACCT 1909 Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134 ||||||||| | || |||| || ||||||| || ||||||||||||| | ||| | Sbjct 1908 GTGTTCTTCTTTAGATCCAGGAACTCAAAGATATCTGCGTGCCAGGGCTCTAGGTACATT 1849 Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTT 245190 || | || || || |||||||| || || |||| || | | || ||| ||| Sbjct 1848 GCAAATGCTCCAGGACGCTTGTTACCACCTTGGT----CAACGTAGCGTGCGGTGTTGTT 1793 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGC 245250 ||| | ||||| ||||||| | |||||||||| || ||||| || ||||||| Sbjct 1792 GAATACACGCAGCATAGGCACAAGTCCGTTAGAGTTTCCATTGGTTCCAGCGATGTAGCT 1733 Query 245251 GCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAG 245310 | ||| |||| ||| | | | || | || ||||| ||||||||| | Sbjct 1732 TTCTTTGGATCTGATCTTGTGAACGTTGAGTCCGATACCTCCGGCACTCTTGGAGATCAT 1673 Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370 |||||| |||| | ||||| || || || ||| ||| || || |||| || Sbjct 1672 CGCGCAGGTCTTCAGGGTGTTGTAGATACCTTCAATGGAGTCGTCCTCGATTGTGAGAAG 1613 Query 245371 AAAGCAGGAGGACAGCTGGGG----CTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGG 245426 || || || || |||||||| |||| ||| | ||||||||| || || | Sbjct 1612 GAAACACGATGATAGCTGGGGACGTCTTG----TGCCGGCGTTGAACAGGGTAGGTGAAG 1557 Query 245427 CGTGGGTAAA 245436 |||| ||||| Sbjct 1556 CGTGTGTAAA 1547 >seq39701 Length=4095 Score = 221 bits (244), Expect = 2e-52 Identities = 425/613 (69%), Gaps = 29/613 (5%) Strand=Plus/Plus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG--TTCAT 42481 |||| |||||||| ||| ||| || || || || ||||| || || | || |||| Sbjct 2344 TGGCTTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAATCT--CCTCGAGCGCTTCAG 2401 Query 42482 GAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 || || || | ||||| || ||||||||||| |||||||| ||||| ||||| Sbjct 2402 CGGTGAAGTACAAATCGCCGAGGCACGTTGCTTCTACGGATTCCAGATCGCCATTGAGAA 2461 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC---GTCGA 42598 | | ||||||||| ||||| ||| || || | || ||||||| || ||| | | Sbjct 2462 CATCCACTCTGAGATGTACTCCACGCTTATCGAGACATACATCCGTGACCCCCGTGAGAA 2521 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTG-CATCAAGAAGAAGGCGGACT 42657 | |||| || || || || || ||||| | ||||| | ||||||| ||||| |||| Sbjct 2522 GGATAAC---CTATTTAACGCTATTGAGAC-ACTCCCTGCCGTCAAGAAAAAGGCCGACT 2577 Query 42658 GGGCGCTCAACTGGATCGA-GAGTCCCGA---CGCAACGTTCGGCGAGAGGCTGGTAGCC 42713 |||| ||||| |||||| | || ||| | | | ||||| ||| | |||||||| Sbjct 2578 GGGCCCTCAAGTGGATCAACGA----CGATGCCTCCAGTTTCGGTGAGCGTGTGGTAGCC 2633 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 || | || || ||||| ||||| ||||| ||| |||| ||||| ||||| ||| | ||| Sbjct 2634 TTCGCTGCAGTAGAGGGTATCTTTTTCTCTGGCTCCTTTGCCTCGATCTTTTGGATGAAG 2693 Query 42774 CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || | | ||||| ||||| || ||||| || || | |||||||| || ||||| Sbjct 2694 AAGCGTGGGCTAATGCCTGGACTAACTTTCTCCAATGAGTTGATCAGCAGAGATGAGGGA 2753 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC---AAGCCCTCG 42890 || || | |||||||| || || | | | ||| |||||| || || || || || Sbjct 2754 CTCCACTGTGACTTTGCTTGTCTGC--TACACGA-CCACCT--GGAACGTAAACCCAGCG 2808 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 | || || | ||||| || || || |||||||| | || ||||| ||| Sbjct 2809 CCGAAG-TCGTGAAGAGTATCATTGTAGATGCTGTTAAGATCGAGCAAGAATTCCTGACG 2867 Query 42951 CAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAG 43010 | | || |||||| | || | || ||||| ||| | || |||||| |||||||| || Sbjct 2868 GATGCCCTTCCCGTGGCTCTAATTGGAATGAATCACAAGCTTATGTGCCAGTACATCGAG 2927 Query 43011 TACGTCGCCGACC 43023 | ||| ||||||| Sbjct 2928 TTCGTGGCCGACC 2940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943814088383600