Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq753 161 2e-34 seq27769 159 8e-34 seq37552 143 6e-29 seq37601 84.2 5e-11 >seq753 Length=412 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| ||| || | ||| | || || || || ||||| |||||||| Sbjct 163 CCACCACGCAGTCGAAGAACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGGCT 222 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| || || ||||| || || || | |||||| ||| | ||| Sbjct 223 AGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAGGG 282 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||||||||| || ||||| || || |||| |||||| ||||| || Sbjct 283 ATACCCTCCTTATCCTGGATTTTAGCCTTCACATTATCGATAGTATCGCTAGATTCAACA 342 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || ||||||||||| || |||||||| Sbjct 343 TCCAGGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 389 >seq27769 Length=1647 Score = 159 bits (176), Expect = 8e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| ||||| || || | || || ||||| ||||||||||| ||||||||| Sbjct 587 TCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCTAATTGTTTACCTGCGAAG 646 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| ||| ||| || ||||| ||||| || ||||| ||||||| || Sbjct 647 ATTAGTCGCTGCTGATCTGGTGGTATGCCTTCCTTATCTTGTATTTTAACTTTCACATTA 706 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||||| ||| || || || || || | |||||| ||||| || || || ||||||||| Sbjct 707 TCTATAGTATCACTAGACTCGACATCCAACGTGATAGTCTTACCAGTGAGCGTCTTGACG 766 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 767 AATATCTGCAT 777 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 |||||||||| || ||||| || ||||||||||| || || ||||| || ||||| Sbjct 797 ACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCAAGTGTGCGGCCATCTTCA 856 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | ||||| || || |||||||| ||||| ||| ||||||||||| || || || Sbjct 857 AGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGGGATTCCTTCCTTGTCTTGT 916 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || || ||||| || || || | ||| || || || || ||||| ||||| ||||| Sbjct 917 ATCTTGGCCTTCACATTATCAATCGTATCACTGGACTCCACATCGAGGGTGATAGTCTTT 976 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || || || ||||| Sbjct 977 CCAGTTAGTGTCTTCACAAAAATTTGCAT 1005 >seq37552 Length=3269 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | | || || |||| || || || || || || || ||||| Sbjct 3020 CCTCCGCGGAGACGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCC 3079 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | ||| ||||| |||||||||| |||||| ||| | ||| Sbjct 3080 AGGGTACGTCCATCTTCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGGGGG 3139 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || || || ||||| || || || | ||| |||||||| || Sbjct 3140 ATGCCCTCCTTATCCTGAATCTTAGCCTTCACATTATCGATGGTATCACTCGATTCGACA 3199 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || ||||||||||| || |||||||| Sbjct 3200 TCCAAGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3246 >seq37601 Length=3285 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| ||| || || ||||| ||||||||||| Sbjct 2438 CCACCACGAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGCT 2379 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 || |||||||| ||||| | || || || |||||||| |||||||| ||| Sbjct 2378 AGTGTGCGTCCATCTTCCAGCTGCTTACCGGCGAAGATAAGACGCTGCTGA 2328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178982039385830