Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq44045 132 6e-26 >seq44045 Length=9771 Score = 132 bits (146), Expect = 6e-26 Identities = 563/881 (64%), Gaps = 25/881 (3%) Strand=Plus/Minus Query 114452 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 114511 ||||| |||||||| ||||| | ||||| ||||||||||||| || || | Sbjct 2322 TTGACGTACTTAGGCAGGGCCAGGGACGCAAGATTACACACAGCCACTTCGTCGGGGGAA 2263 Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 | |||||| | || || |||| ||| || | ||| ||||||||||| |||| || Sbjct 2262 GAGTACTCGACGATCTCACAGCACAGATTAGAGCACTTGATGGTGCCCAAATTCTGCTGG 2203 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || ||| ||| |||||||||||||| ||||||||||| || || ||||| || || Sbjct 2202 TTACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCGGTCTGC 2143 Query 114632 GACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 114690 | || ||||| || ||| | | | | | || | | | || || |||| ||||| Sbjct 2142 GCCTCTAGAATGGCGAACCACAGCTGCTGTGCCTTGATTACTCGC-TTAGCTCTACCCTC 2084 Query 114691 CTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 114750 ||||||||| ||| || |||||||||| | ||| | | || | ||||| Sbjct 2083 GCGCTCGTACTTGTGGTATAGATCTTCAAACTCCTTTCCCCAGACATCGTCCAAGCCTGG 2024 Query 114751 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAG 114810 ||| | | ||| |||| ||| ||| | || | | || || | ||| || || Sbjct 2023 TGCATCACTTGGTGAGAACAGACTCCACTCTCCGTCGGCTTCGCACCGTTCCATAAATAG 1964 Query 114811 GTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCG-AGCTTCT-TCATCC----CC 114864 || |||||| || | |||| ||||| || ||| | || || | | || Sbjct 1963 ATCGTTGATCCACAGGCCGAAGAAAAGATCACGTGCGCGCATCTCCTCTGAACCTGTGTT 1904 Query 114865 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 114924 || || ||| |||| || || | |||||| |||||||| || || ||||||| Sbjct 1903 CTTCTTTAGA------TCCAGGAACTCAAAGATATCTGCGTGCCAGGGCTCTAGGTACAT 1850 Query 114925 CGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATT 114978 || | || || | |||| |||| | |||| || || | || ||| || Sbjct 1849 TGCAAATGCTCC---AGGACGCTTGTTACCACCTTGGTCAACGTAGCGTGCGGTGTTGTT 1793 Query 114979 AAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGA 115038 ||||| || ||||| || | | || | ||| | ||||| || || || || Sbjct 1792 GAATACACGCAGCATAGGCACAAGTCCGTTAGAGTTTCCATTGGTTCCAGCGAT-GTAGC 1734 Query 115039 CTT-ATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 115097 || |||| ||||| | || | || | || ||||| || || | ||| ||||| Sbjct 1733 TTTCTTTGGATCTGATCTTGTGAACGTTGAGTCCGATACCTCCGGCACTCTTGGAGATCA 1674 Query 115098 GCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAA 115157 |||||| | | || || |||||| || || || ||||| ||| ||| || || Sbjct 1673 TCGCGCAGGTCTTCAGGGTGTTGTAGATACCTTCAATGGAGTCGTCCTCGATTGTGAGAA 1614 Query 115158 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 115217 |||| || || | || || | | ||| || |||||||| ||||| |||| |||| Sbjct 1613 GGAAACACGATGATAGCTGGGGACGTCTTGTGCCGGCGTTGAACAGGGTAGGTGAAGCGT 1554 Query 115218 GGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCC 115277 | | ||| ||| || || | || | ||| || || | | | ||||| || | Sbjct 1553 GTGTAAACCAACCCTGTGATAGGTTGTTGTATGTTTCAATAGCCCCATCGATGTCGTCGC 1494 Query 115278 CGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 115318 | || ||||| | || ||||||| ||||| || ||| Sbjct 1493 CATGGATACCCACACTCACACGCATAAGCATGTGCTGAGGT 1453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597021434063800