Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq27769 125 8e-24 seq753 107 2e-18 >seq27769 Length=1647 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||||||| | ||| || || ||||| ||| ||||||||| || || ||||||||| Sbjct 551 CCGCCTCTTAATCTCAAAACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCC 610 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || |||| |||| || ||||| ||||| || ||||||||||| || | ||| Sbjct 611 AAAGTACGGCCGTCCTCTAATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGT 670 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||| || ||||| ||| | | | | || || || || || ||| Sbjct 671 ATGCCTTCCTTATCTTGTATTTTAACTTTCACATTATCTATAGTATCACTAGACTCGACA 730 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||| || || || || |||||||| || || || ||||| Sbjct 731 TCCAACGTGATAGTCTTACCAGTGAGCGTCTTGACGAATATCTGCAT 777 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| ||||| || || | ||| | || ||| || || ||||| || ||||| Sbjct 778 ACCACCTCGCAAACGTAAAACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGC 837 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||| |||||||| || || ||||||||||| |||| || Sbjct 838 AAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGG 897 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||| || || || | | | | ||| || || || ||||| Sbjct 898 GATTCCTTCCTTGTCTTGTATCTTGGCCTTCACATTATCAATCGTATCACTGGACTCCAC 957 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||| ||||| || || || ||||| ||||| ||||| |||||||| || Sbjct 958 ATCGAGGGTGATAGTCTTTCCAGTTAGTGTCTTCACAAAAATTTGCATGTT 1008 >seq753 Length=412 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| ||| |||||| ||||||||||| || || || || || | || || Sbjct 181 ACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGGCTAGTGTACGTCCATCTTCC 240 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||| ||||| || || | |||||||| || | || | | |||||| ||| | Sbjct 241 AACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGG 300 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 ||||| || | | | | || ||||| ||||| ||||| | ||||| || || Sbjct 301 ATTTTAGCCTTCACATTATCGATAGTATCGCTAGATTCAACATCCAGGGTGATTGTCTTT 360 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| |||||||| ||||| Sbjct 361 CCAGTGAGAGTCTTGACAAAGATCTGCAT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542910739732400