Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq27769 105 5e-18 seq37552 93.3 3e-14 seq753 91.5 1e-13 >seq27769 Length=1647 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| |||||||| || | || || || ||||| ||||| ||||| Sbjct 551 CCGCCTCTTAATCTCAAAACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCC 610 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | |||| ||||||||||| || ||| | || | ||||| || || ||| Sbjct 611 AAAGTACGGCCGTCCTCTAATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGT 670 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||||| ||| ||| | ||||||||||| ||| || || Sbjct 671 ATGCCTTCCTTATCTTGTATTTTAACTTTCACATTATCTATAGTATCACTAGACTCGACA 730 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || ||||| || || || || || || || |||||| Sbjct 731 TCCAACGTGATAGTCTTACCAGTGAGCGTCTTGACGAATATCTGCATA 778 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||||||| | |||||| | |||||| || || ||||| ||||| || || || Sbjct 779 CCACCTCGCAAACGTAAAACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCA 838 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | ||||| ||||| | |||| ||||| || ||| || Sbjct 839 AGTGTGCGGCCATCTTCAAGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGGG 898 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| || ||| | || || ||||| || || || Sbjct 899 ATTCCTTCCTTGTCTTGTATCTTGGCCTTCACATTATCAATCGTATCACTGGACTCCACA 958 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || | ||| || || || || || || || || |||||||||||||| ||| Sbjct 959 TCGAGGGTGATAGTCTTTCCAGTTAGTGTCTTCACAAAAATTTGCATGTTT 1009 >seq37552 Length=3269 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| || || || |||||||||||| || | | | ||||| | ||| Sbjct 3044 TGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTACGTCCATCTTCCAGTTGC 3103 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | ||||||||||| || || || || || ||||| || ||| || Sbjct 3104 TTTCCAGCGAAGATCAAACGCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGAATCTTA 3163 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || ||||| || ||| || || ||||| || || || || || Sbjct 3164 GCCTTCACATTATCGATGGTATCACTCGATTCGACATCCAAGGTGATTGTCTTTCCAGTG 3223 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||| || |||||| Sbjct 3224 AGAGTCTTGACAAAGATCTGCATA 3247 >seq753 Length=412 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| || | ||| ||||| || || || || || || || ||||| ||| Sbjct 163 CCACCACGCAGTCGAAGAACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGGCT 222 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| || || || ||||| | || |||||||| || || || Sbjct 223 AGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAGGG 282 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || ||||| || ||| | || |||||||||||| ||| || Sbjct 283 ATACCCTCCTTATCCTGGATTTTAGCCTTCACATTATCGATAGTATCGCTAGATTCAACA 342 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| || || || || || ||||| || ||||| || |||||| Sbjct 343 TCCAGGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCATA 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357198236018225