Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq37552 91.5 1e-13 seq27769 87.8 2e-12 >seq37552 Length=3269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 45105 TATTTTATT-CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATT 45163 ||| | ||| ||||||||||| | |||||| || || || || || ||||| || || || Sbjct 3010 TATCTAATTACCTCCGCGGAGACGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTT 3069 Query 45164 ATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTG 45223 |||||| | ||| ||| |||| ||| ||||| ||| | ||||| || ||||| Sbjct 3070 GTAATCGGCCAGGGTACGTCCATCTTCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTG 3129 Query 45224 GTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGA 45283 || || || ||||| || ||||| ||||| || || | || | ||| || Sbjct 3130 ATCAGGGGGGATGCCCTCCTTATCCTGAATCTTAGCCTTCACATTATCGATGGTATCACT 3189 Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || | || || || || ||||| || ||||| || ||||| Sbjct 3190 CGATTCGACATCCAAGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3246 >seq27769 Length=1647 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGA 45184 ||||| |||| |||| || || ||||||||||| |||||||| || | | || Sbjct 563 CTCAAAACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCCAAAG----TACG 618 Query 45185 ATCGTCC---AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTC 45241 ||||| |||||||| |||||| | || | ||| ||||| || || || |||||||| Sbjct 619 GCCGTCCTCTAATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGTATGCCTTC 678 Query 45242 TTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 |||||||| ||||| ||| | |||| || || ||||||||| || | || Sbjct 679 CTTATCTTGTATTTTAACTTTCACATTATCTATAGTATCACTAGACTCGACATCCAACGT 738 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || || || || || || ||||| Sbjct 739 GATAGTCTTACCAGTGAGCGTCTTGACGAATATCTGCAT 777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451751857970600