Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq44045 129 7e-25 seq39701 82.4 9e-11 >seq44045 Length=9771 Score = 129 bits (142), Expect = 7e-25 Identities = 570/886 (64%), Gaps = 35/886 (4%) Strand=Plus/Minus Query 116413 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472 ||||| |||||||| ||||| | ||||| ||||||||||||| || || | Sbjct 2322 TTGACGTACTTAGGCAGGGCCAGGGACGCAAGATTACACACAGCCACTTCGTCGGGGGAA 2263 Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 | |||||| | || || |||| ||| || | ||| ||||||||||| |||| || Sbjct 2262 GAGTACTCGACGATCTCACAGCACAGATTAGAGCACTTGATGGTGCCCAAATTCTGCTGG 2203 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||| ||| |||||||||||||| ||||| ||||| || || ||||| || || Sbjct 2202 TTACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCGGTCTGC 2143 Query 116593 GACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 116651 | || ||||| || ||| | | | | | || | | | || || |||| ||||| Sbjct 2142 GCCTCTAGAATGGCGAACCACAGCTGCTGTGCCTTGATTACTCGC-TTAGCTCTACCCTC 2084 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTC--TTCACC-CACAGCCTCTGAGAGCCC 116708 ||||||||| ||| || | |||||||| ||| || ||| | || || || Sbjct 2083 GCGCTCGTACTTGTGGTATAGATCTTCAAACTCCTTTCCCCAGACATCGTCCAAG---CC 2027 Query 116709 TGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768 |||||| | | ||| |||| ||| ||| | || | | || ||| | ||| || Sbjct 2026 TGGTGCATCACTTGGTGAGAACAGACTCCACTCTCCGTCGGCTTCGCACCGTTCCATAAA 1967 Query 116769 GAGGTCTGGGATCCAGAGCGCCG-AGAAGAGATCCCGACAGCG-AGCTTCT-TCATCC-- 116823 || || |||||| || |||| |||| ||||| || ||| | || || | | || Sbjct 1966 TAGATCGTTGATCCACAG-GCCGAAGAAAAGATCACGTGCGCGCATCTCCTCTGAACCTG 1908 Query 116824 --CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGT 116881 || || ||| |||| || || | |||||| |||||||| || || |||| Sbjct 1907 TGTTCTTCTTTAGA------TCCAGGAACTCAAAGATATCTGCGTGCCAGGGCTCTAGGT 1854 Query 116882 ACACCGCGATTGACCC------CTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTG 116935 ||| || | || || |||| |||| | |||| || || | || || Sbjct 1853 ACATTGCAAATGCTCCAGGACGCTTG---TTACCACCTTGGTCAACGTAGCGTGCGGTGT 1797 Query 116936 CGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATAC 116995 ||| ||||| || ||||| || | | || | ||| | ||||| || || || Sbjct 1796 TGTTGAATACACGCAGCATAGGCACAAGTCCGTTAGAGTTTCCATTGGTTCCAGCGAT-G 1738 Query 116996 GAGACTT-GTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 117054 || || |||| ||||| | ||| | || | || ||||| || || | ||| ||| Sbjct 1737 TAGCTTTCTTTGGATCTGATCTTGTGAACGTTGAGTCCGATACCTCCGGCACTCTTGGAG 1678 Query 117055 ATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 117114 || ||||| | | || || |||||| || || || ||||| ||| ||| | Sbjct 1677 ATCATCGCGCAGGTCTTCAGGGTGTTGTAGATACCTTCAATGGAGTCGTCCTCGATTGTG 1618 Query 117115 ATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 117174 | ||||| || || | || || | | ||| || |||||||| ||||| |||| Sbjct 1617 AGAAGGAAACACGATGATAGCTGGGGACGTCTTGTGCCGGCGTTGAACAGGGTAGGTGAA 1558 Query 117175 GCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCA-AGACAGAGGGAATGTC 117233 ||||| | ||| ||| || || | || | ||| || || | || | | | ||||| Sbjct 1557 GCGTGTGTAAACCAACCCTGTGATAGGTTGTTGTATGTTTCAATAGCCCCATCG-ATGTC 1499 Query 117234 TTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 || || || ||||| | || ||||||| ||||| || ||| Sbjct 1498 GTCGCCATGGATACCCACACTCACACGCATAAGCATGTGCTGAGGT 1453 >seq39701 Length=4095 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || |||||| ||||| || | | ||| | ||||| ||||| || || Sbjct 2771 AGCAAAGTCACAGTGGAGTCCCTCATCTCTGCTGATCAACTCATTGGAGAAAGTTAGTCC 2712 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| || || |||||||||| ||| || |||| ||| ||||||||||| ||||| Sbjct 2711 AGGCATTAGCCCACGCTTCTTCATCCAAAAGATCGAGGCAAAGGAGCCAGAGAAAAAGAT 2652 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTC 127671 ||||| || ||||| || | | |||||| Sbjct 2651 ACCCTCTACTGCAGCGAAGGCTACCACACGCTC 2619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613166051652600