Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq37552 150 4e-31 seq753 109 1e-18 seq37601 104 6e-17 seq27769 100 7e-16 seq30531 84.2 5e-11 >seq37552 Length=3269 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| ||||| |||||||| || | |||||| || |||| || | |||||||||| Sbjct 3038 ACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTACGTCCATCTTCC 3097 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 || |||||||| |||||||| | ||||||||| || || || || || |||||| Sbjct 3098 AGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGA 3157 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| |||||| |||| ||| || | | ||| |||||||| ||||| ||||| Sbjct 3158 ATCTTAGCCTTCACATTATCGATGGTATCACTCGATTCGACATCCAAGGTGATTGTCTTT 3217 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || ||||| || || Sbjct 3218 CCAGTGAGAGTCTTGACAAAGATCTG 3243 Score = 104 bits (114), Expect = 6e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| |||||||| ||||||||||| | || |||||||||||||| | ||||| Sbjct 3117 ATCTTCGCTGGAAAGCAACTGGAAGATGGACGTACCCTGGCCGATTACAACATTCAGAAG 3058 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||||||||||||||| ||| | || || Sbjct 3057 GAGTCTACTCTTCACCTTGTGTTGCGTCTCCG 3026 >seq753 Length=412 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| || |||||||||||||| ||||| || |||||||| |||||| || ||||| Sbjct 4 CCATCCTCAAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGGATACCTTCC 63 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| ||| ||| || | || || | |||||||||| | ||| Sbjct 64 TTATCCTGAATCTTCGCCTTGACGTTATCAATTGTATCGCTGCTTTCTACATCAAGCGTA 123 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || |||||||| ||||| || || Sbjct 124 ATAGTCTTACCAGTAAGAGTTTTAACAAAGATCTG 158 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || || | || || || |||||||| || | |||||||| || | || Sbjct 169 CGCAGTCGAAGAACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGGCTAGTGTA 228 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| ||||||||| || || || | ||||||||| || ||| || || Sbjct 229 CGTCCATCTTCCAACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAGGGATACCC 288 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| || || |||||| |||| || || | | ||| ||||||| Sbjct 289 TCCTTATCCTGGATTTTAGCCTTCACATTATCGATAGTATCGCTAGATTCAACATCCAGG 348 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||| || ||||| || || Sbjct 349 GTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTG 386 >seq37601 Length=3285 Score = 104 bits (114), Expect = 6e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || |||||||| |||| ||| ||||| || | || Sbjct 2432 CGAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGCTAGTGTG 2373 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | |||||||||||||||||| ||||||||||| ||||||||||| || || Sbjct 2372 CGTCCATCTTCCAGCTGCTTACCGGCGAAGATAAGACGCTGCTGATCAGG 2323 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||||||||| |||||| ||||||||||| | || | ||||| || ||| ||||| Sbjct 2338 CTTATCTTCGCCGGTAAGCAGCTGGAAGATGGACGCACACTAGCCGACTATAACATCCAG 2397 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||| || |||||||| ||| | | ||||| Sbjct 2398 AAGGAGTCCACCCTTCACCTGGTTCTTCGTCTTCG 2432 >seq27769 Length=1647 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| | ||| ||||||||||||| ||| || ||||||||||| | || Sbjct 562 TCTCAAAACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCC 621 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 || || | || || || |||||||| || |||||||| || || || ||||| Sbjct 622 GTCCTCTAATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGTATGCCTTCCTT 681 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || || || ||||| || | || || | | || |||||||||||||| Sbjct 682 ATCTTGTATTTTAACTTTCACATTATCTATAGTATCACTAGACTCGACATCCAACGTGAT 741 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| ||||| || || || || || || Sbjct 742 AGTCTTACCAGTGAGCGTCTTGACGAATATCTG 774 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || ||||| ||||| || || | || |||||||| | || | |||||||| Sbjct 797 ACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCAAGTGTGCGGCCATCTTCA 856 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 ||||| || || || ||||| || |||||||| || || |||||||| || || Sbjct 857 AGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGGGATTCCTTCCTTGTCTTGT 916 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| |||||| || | || || | | || ||||| | ||||| ||||| Sbjct 917 ATCTTGGCCTTCACATTATCAATCGTATCACTGGACTCCACATCGAGGGTGATAGTCTTT 976 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || |||||||||||||| Sbjct 977 CCAGTTAGTGTCTTCACAAAAATTTG 1002 >seq30531 Length=1940 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || || || | || || ||||| |||| ||||||||| || | || Sbjct 794 TCGTAGACGCAGTACCAGATGCAAGGTAGATTCCTTCTGGATGTTGTAGTCCGCTAGGGT 735 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| |||| |||||| ||||| ||||| ||||||||||| || || |||||| Sbjct 734 GCGGCCATCCTCCAACTGCTTACCGGCAAAGATCAGACGCTGCTGATCAGGGGGAATTCC 675 Query 199528 T 199528 | Sbjct 674 T 674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178249657055495