Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq39701 242 4e-59 seq30531 82.4 8e-11 >seq39701 Length=4095 Score = 242 bits (268), Expect = 4e-59 Identities = 526/780 (67%), Gaps = 14/780 (2%) Strand=Plus/Minus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 || || | ||||||||||||||||||||| || |||| | | ||| | ||| | Sbjct 2947 AGAAGGCGGTCGGCCACGAACTCGATGTACTGGCACATAAGCTTGTGATTCATTCCAATT 2888 Query 132781 AGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACG 132840 ||| ||| || || || || || || || ||||||||| || || || | | Sbjct 2887 AGAGCCACGGGAAGGGCATCCGTCAGGAATTCTTGCTCGATCTTAACAGCATCTACAATG 2828 Query 132841 ATTTCCCTAACGCGCGCCGCGCTCGGC---CGTTGCACCAAATGCTTGAACATCAAGCAA 132897 || | | ||| | ||||| || |||| ||| || | | | || ||| Sbjct 2827 ATACTCTTCACGACTTCGGCGCTGGGTTTACGTT---CCAGGTGGTCGTGTAGCAGACAA 2771 Query 132898 GCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCG 132957 |||||||| || || | ||||| || ||| || | || ||| |||||| | || Sbjct 2770 GCAAAGTCACAGTGGAGTCCCTCATCTCTGCTGATCAACTCATTGGAGAAAGTTAGTCCA 2711 Query 132958 GGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACG 133017 ||||| || || || || || | |||||| || | ||| || ||| || || |||| Sbjct 2710 GGCATTAGCCCACGCTTCTTCATCCAAAAGATCGAGGCAAAGGAGCCAGAGAAAAAGATA 2651 Query 133018 CCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATC 133077 ||||| || || ||||| || |||| ||||| ||||| ||| | | | | |||| Sbjct 2650 CCCTCTACTGCAGCGAAGGCTACCACACGCTCACCGAAACTGGAGGCATCGTCGTTGATC 2591 Query 133078 CAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAAC 133137 || || ||||| |||||||||| |||||| || | || || || ||||| || Sbjct 2590 CACTTGAGGGCCCAGTCGGCCTTTTTCTTGACGGCAGGGAGTGTCTCAATAGCGTTAAAT 2531 Query 133138 AAACGGAGTTTC-TCTTCCGAGG--AACGCACGTAGGTGTCGATGAGGGTCGAATACATT 133194 | || | | ||| || || ||| | ||| || ||||| || || || ||||| Sbjct 2530 A---GGTTATCCTTCTCACGGGGGTCACGGATGTATGTCTCGATAAGCGTGGAGTACATC 2474 Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 || ||||| | |||||| |||||||| || || ||||| ||||| || |||||| | | Sbjct 2473 TCAGAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAAGCAACGTGCCTCGGCGATT 2414 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 || ||||| ||| ||||||| ||||| ||||| || || || || ||||| ||| Sbjct 2413 TGTACTTCACCGCTGAAGCGCTCGAGGAGATTCTCGTTCACAATACCATCACTGGCAGCG 2354 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTC- 133373 || || |||| ||| || | ||| ||||||||| || || | | ||||||||| Sbjct 2353 AAGAAAGCCAACACATGGGATAAGAAGTGGCGCTCGCCATCCTTAAGGTTCTCCCAGTCA 2294 Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433 || | || ||||| || |||||||| || ||||| || || ||||| || || || Sbjct 2293 GCTAG-ATCACGAGACAGATCAACCTCCTCAACAGTCCAGAAAGAAGCCTCCGCCTTCTT 2235 Query 133434 GTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 |||||| ||| || ||| ||||| || || || | ||| || || || |||||||| Sbjct 2234 GTACATCTGCCAGATCTCCTGGTATTGGATAGGGAATAGCACGAAGCGACGAGGGTTTTC 2175 >seq30531 Length=1940 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||||||| | || || ||||| || || | || || || ||| |||| || | ||| Sbjct 675 GGAATTCCCCCTGATCAGCAGCGTCTGATCTTTGCCGGTAAGCAGTTGGAGGATGGCCGC 734 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| |||||| | || ||||| |||| |||||| | || Sbjct 735 ACCCTAGCGGACTACAACATCCAGAAGGAATCTACCTTGCATCTGGTACTGCGTCTACGA 794 Query 38466 GGCGG 38470 || || Sbjct 795 GGTGG 799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499894672662400