Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq44045 179 4e-40 >seq44045 Length=9771 Score = 179 bits (198), Expect = 4e-40 Identities = 573/880 (65%), Gaps = 23/880 (3%) Strand=Plus/Minus Query 106445 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 106504 ||||| ||||| || ||||| | || || | ||| || |||||| || || Sbjct 2322 TTGACGTACTTAGGCAGGGCCAGGGACGCAAGATTACACACAGCCACTTCGTCGGGGGAA 2263 Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 | |||||| | || || |||| || || | ||| || || |||||||||| ||| Sbjct 2262 GAGTACTCGACGATCTCACAGCACAGATTAGAGCACTTGATGGTGCCCAAATTCTGCTGG 2203 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 |||||||| |||||||||||||||||| |||||||| || || || ||||| ||||| Sbjct 2202 TTACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCGGTCTGC 2143 Query 106625 GACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTC 106683 | || ||||| || ||||| | | | | || | | | || || || | ||||| Sbjct 2142 GCCTCTAGAATGGCGAACCACAGCTGCTGTGCCTTGATTACTCGC-TTAGCTCTACCCTC 2084 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC---ACCGCGTCGGAGAGACC 106740 ||||||||| ||| || |||||||||||| ||| || |||| || || Sbjct 2083 GCGCTCGTACTTGTGGTATAGATCTTCAAACTCCTTTCCCCAGACATCGTCCAAG---CC 2027 Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800 |||||| | ||| |||| ||| ||| | || | | || ||| | ||| || Sbjct 2026 TGGTGCATCACTTGGTGAGAACAGACTCCACTCTCCGTCGGCTTCGCACCGTTCCATAAA 1967 Query 106801 AAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 106858 || || ||||||||| || |||| ||||| | || ||| || |||| Sbjct 1966 TAGATCGTTGATCCACAGGCCGAAGAAA--AGATCACGTGCGCGCATCTCCTCTGAACCT 1909 Query 106859 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 106918 ||| || || |||||||| | |||||| |||||||| ||||| || || | | Sbjct 1908 GTGTTCTTCTTTAGATCCAGGAACTCAAAGATATCTGCGTGCCAGGGCTCTAGGTACATT 1849 Query 106919 GCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTA 106972 || | | ||| ||||| ||| |||| | || ||||| || ||| ||| Sbjct 1848 GCAAATGCTCC---AGGACGCTTGTTACCACCTTGGTCAACGTAGCGTGCGGTGTTGTTG 1792 Query 106973 AATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT 107032 ||||| || ||||| || | || || | || | ||||| || || || || | Sbjct 1791 AATACACGCAGCATAGGCACAAGTCCGTTAGAGTTTCCATTGGTTCCAGCGAT-GTAGCT 1733 Query 107033 TT-ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTG 107091 || |||| ||| | | || | || | || ||||| || || | ||| ||||| Sbjct 1732 TTCTTTGGATCTGATCTTGTGAACGTTGAGTCCGATACCTCCGGCACTCTTGGAGATCAT 1673 Query 107092 CGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAG 107151 ||| || | | || || |||||||| | || ||||| |||| | | | || ||| Sbjct 1672 CGCGCAGGTCTTCAGGGTGTTGTAGATACCTTCAATGGAGTCGTCCTCGATTGTGAGAAG 1613 Query 107152 GAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 107211 ||| || || | ||| || | | ||| || || ||||| ||||| |||| ||||| Sbjct 1612 GAAACACGATGATAGCTGGGGACGTCTTGTGCCGGCGTTGAACAGGGTAGGTGAAGCGTG 1553 Query 107212 AATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 107271 | ||| ||| || || | |||| |||||| || | | ||| ||||| || || Sbjct 1552 TGTAAACCAACCCTGTGATAGGTTGTTGTATGTTTCAATAGCCCCATCGATGTCGTCGCC 1493 Query 107272 GTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311 ||||| || | ||||||||||| ||||| || ||| Sbjct 1492 ATGGATACCCACACTCACACGCATAAGCATGTGCTGAGGT 1453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589652733801400