Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq37552 127 5e-24 seq27769 109 1e-18 seq753 96.9 8e-15 seq37601 93.3 9e-14 >seq37552 Length=3269 Score = 127 bits (140), Expect = 5e-24 Identities = 162/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| |||||||||||||| ||||| || ||||| ||||||||||| || || | Sbjct 3028 GAGACGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTACG 3087 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || |||||||| | || || || || || || ||||| || Sbjct 3088 TCCATCTTCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGGGGGATGCCCTC 3147 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAG 195098 || || ||||| || ||| || || || ||||| || ||| ||| || || | Sbjct 3148 CTTATCCTGAATCTTAGCCTTCACATTATCGATGGTATCACTCGA---TTCGACATCCAA 3204 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| || | ||| || || || | ||||| Sbjct 3205 GGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 3246 >seq27769 Length=1647 Score = 109 bits (120), Expect = 1e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | ||| | ||||||||| ||||| || || ||||| || | ||| Sbjct 556 TCTTAATCTCAAAACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCCAAAGT 615 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || || || | || |||||||||||||| ||||| || || ||||| || ||||| Sbjct 616 ACGGCCGTCCTCTAATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGTATGCC 675 Query 195039 TTCTTTGTCTTGAATTTT 195056 ||| || ||||| ||||| Sbjct 676 TTCCTTATCTTGTATTTT 693 >seq753 Length=412 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || ||||| || ||||||||||| ||||| || || | |||||||| | |||| Sbjct 187 TGCAGTGTTGACTCCTTCTGAATATTGTAGTCGGCTAGTGTACGTCCATCTTCCAACTGC 246 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || || || || ||||| || || || || || || ||||| Sbjct 247 TTTCCAGCAAAAATTAAACGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGGATTTTA 306 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || || || || | ||| || || ||||| | |||||||| || Sbjct 307 GCCTTCACATTATCGATAGTATCGCTAGATTCAACATCCAGGGTGATTGTCTTTCCAGTG 366 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || || || | ||||| Sbjct 367 AGAGTCTTGACAAAGATCTGCAT 389 >seq37601 Length=3285 Score = 93.3 bits (102), Expect = 9e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| |||||||| |||||||| || || || || || ||||| || || | |||||||| Sbjct 2421 AACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGCTAGTGTGCGTCCATCTTC 2362 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||||||||| ||||||||||| || || || || || || || ||| Sbjct 2361 CAGCTGCTTACCGGCGAAGATAAGACGCTGCTGATCAGGGGGGATACCT 2313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108849235359995