Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq27769 107 1e-18 seq37552 100 2e-16 >seq27769 Length=1647 Score = 107 bits (118), Expect = 1e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || |||||||| | ||| | || |||| || |||||||| || ||||| Sbjct 815 TCTTTCTGTATATTATAGTCAGCAAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCAAAG 874 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| ||||| || | || | || |||||||| ||||| || || Sbjct 875 ATCAGTCGCTGCTGATCGGGGGGGATTCCTTCCTTGTCTTGTATCTTGGCCTTCACATTA 934 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| |||| || ||| ||||||| ||| || || ||||| || || ||||||||| Sbjct 935 TCAATCGTATCACTGGACTCCACATCGAGGGTGATAGTCTTTCCAGTTAGTGTCTTCACA 994 Query 34971 AAGATCTGCATATT 34984 || || ||||| || Sbjct 995 AAAATTTGCATGTT 1008 >seq37552 Length=3269 Score = 100 bits (110), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || | ||| | ||| |||| ||||| || ||||| || || Sbjct 3056 TCCTTCTGAATGTTGTAATCGGCCAGGGTACGTCCATCTTCCAGTTGCTTTCCAGCGAAG 3115 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| || | || | |||||||| || |||||| || || || Sbjct 3116 ATCAAACGCTGCTGATCAGGGGGGATGCCCTCCTTATCCTGAATCTTAGCCTTCAC--AT 3173 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| |||| | || ||||| | ||| || || ||||| ||||||||||| Sbjct 3174 --TATCGATGGTATCACTCGATTCGACATCCAAGGTGATTGTCTTTCCAGTGAGAGTCTT 3231 Query 34967 CACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 3232 GACAAAGATCTGCATA 3247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324457596343080