Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq42503 161 8e-34 seq36005 111 1e-18 seq753 111 1e-18 seq27769 105 5e-17 seq37929 104 2e-16 seq43121 96.9 3e-14 seq40476 91.5 1e-12 >seq42503 Length=6233 Score = 161 bits (178), Expect = 8e-34 Identities = 368/552 (67%), Gaps = 20/552 (4%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || || |||||||| | || |||| || ||| Sbjct 3414 ATTGGAATCGATCTCGGTACCACTTACTCATGCGTTGGTGTATTCCAGCATGGCAAGGTT 3355 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || || |||||||||||||| ||| |||| || || || || ||| ||||||| || Sbjct 3354 GAGATCATCGCCAATGATCAAGGCAACCGAACAACGCCCTCGTACGTTGCTTTCACAGAC 3295 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 |||| | || | || || ||||| || ||||| | || ||| || ||| || Sbjct 3294 TCTGAGCGACTATTAGGAGACGCAGCTAAGAATCAAATCGCTCTTAACCCGCACAACACC 3235 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || |||||||| ||| | || || ||| |||||||| || ||||||||| Sbjct 3234 GTGTTCGATGCTAAGCGTCTGATAGGCCGAAAGTTTAATGACAAAGAAGTGCAGGCAGAT 3175 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAA-AACCTTATATTGAAGCTAC 550293 ||||||| | | ||| || |||| |||| || | | | |||| Sbjct 3174 GTGAAGCACTTCTCATTCGAAGTTGT----------GGAACAAAATAAGAAGCCAGCTGT 3125 Query 550294 TCA--TGAAGGATCTGTT---AAACAA----TTTTCACCAGAACAAATTTCATCTATGGT 550344 || || || | || ||| || || | ||| || | || || |||||||| Sbjct 3124 ACAAGTGGAGTACATGGCTGAAAAGAAGATATTCTTACCTGAGGAGATATCGTCTATGGT 3065 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGT 550404 | | ||||||||| |||| || |||| | | || |||| || || || || Sbjct 3064 GCTGACCAAAATGAAAGAAACGGCAGAGGCTTATTTGGGAACTAAAGTGACAGACGCCGT 3005 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 || || || ||||||||||| ||||| |||||| | ||| ||| || |||||||| Sbjct 3004 GATCACGGTGCCAGCATATTTCAATGATTCACAAAGGCAAAGTACAAAGGATGCTGGGGC 2945 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 ||| ||||| || ||||| || ||||| ||||| || || || || ||||| |||| || Sbjct 2944 TATCGCTGGTCTAAATGTGCTACGTATAATCAACGAGCCCACAGCCGCTGCGATTGCGTA 2885 Query 550525 TGGACTTGATAA 550536 || || || || Sbjct 2884 CGGTCTGGACAA 2873 Score = 105 bits (116), Expect = 5e-17 Identities = 459/721 (64%), Gaps = 10/721 (1%) Strand=Plus/Minus Query 551859 CGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCT 551918 || |||||||| ||||| ||||| || || || | ||| | | |||| || Sbjct 2688 CGTAAAAACAAGAAGGATCTGACTACAAACGCAAAGGCGATGCGTAGATTGCGAACGGCA 2629 Query 551919 TGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCA 551978 ||||| | || ||||| | | || ||| | | || ||| | | ||| | ||||| Sbjct 2628 TGCGAGAAGGCTAAACGTACGTTGTCGTCTTCTGCGCAGGCCAATGTAGAAATCGATTCT 2569 Query 551979 TTATTTGAGGGAATTGATTATAATAC--GCCTATTTCGAGGGCCAAATTTGAAGATATTT 552036 | || ||||| | |||| | || || | ||||| | | |||||||| || | Sbjct 2568 CTTTTCGAGGGTACCGATTTCTACACTAGCATCACTCGAGCTCGA--TTTGAAGAAATGT 2511 Query 552037 GTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGA 552096 || | ||||| || | ||| | |||||||| || ||| |||| ||||| | || | Sbjct 2510 GTGCCGATCTTTTCCGCGGCACACTAGAACCAGTGGAGAAAGCTTTACGAGATGCGAAAA 2451 Query 552097 TTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAA 552156 | || || || | | |||| |||||||| || ||||| ||||| | ||||| || | Sbjct 2450 TGGACAAGTCGAGTATCGATGAGATTGTGCTGGTAGGTGGTTCTACTCGTATTCCGAAGA 2391 Query 552157 TTCGCGAAATGTTAAGTTCTTATT---TCAATGGTAAAAAATTAAATGAAAGTGTTAATC 552213 ||| ||| |||| |||| | | ||||||||||| | | || | || | ||| Sbjct 2390 TTCA-GAA--GTTACTTTCTGAGTGCTTCAATGGTAAAGAGCTGAACAAGAGCATCAATG 2334 Query 552214 CAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTG 552273 |||||| || || || ||||| |||||| |||| | || ||||| || | || Sbjct 2333 TAGATGAAGCAGTCGCATATGGCGCCGCAGTTCAGGGTGCCATTCTCAGGGGTGACACGC 2274 Query 552274 ATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAA 552333 | | | | || || | ||| | ||||| |||| | || | ||| | || | Sbjct 2273 ACAGCTCAGTCTCAGATCTTTTGCTTTTGGATGTCGCTCCGTTGTCAATGGGTATTGAGA 2214 Query 552334 CAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAAT 552393 | | || ||| | ||||| || || | | || || || ||||| || || Sbjct 2213 CCGCCGGTGGTGTGATGACCTCACTGATAAAGCGCAACACCACCATTCCCACAAAGCAAA 2154 Query 552394 CTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAG 552453 | | || || || ||| | || ||||| | ||||| | ||||| | | || | Sbjct 2153 CACAGACCTTCTCCACTTATGCTGACAATCAGCCAGCTGTGTCCATTCAGGTGTACGAGG 2094 Query 552454 GAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTC 552513 | || || | || ||||| || | | || || | ||| || | | || ||| Sbjct 2093 GTGAGCGAGCCATGACGAAAGACAACCACAAGCTGGGCGCCTTTGATCTTGTCGGCATTA 2034 Query 552514 CTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAA 552573 | |||||||| | ||| ||| || || |||||||| || ||||||||||| ||||| | Sbjct 2033 CCCCTGCTCCCAGAGGAACACCCCAGATCGAAGTTACCTTTGATATCGATGCGAATGGTA 1974 Query 552574 T 552574 | Sbjct 1973 T 1973 >seq36005 Length=2846 Score = 111 bits (122), Expect = 1e-18 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 550319 TCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC-AGTGCTTT 550377 ||||| || |||| ||| |||||||| | |||||| |||| || || || | Sbjct 1170 TCACCTGAGGAAATCTCAGCTATGGTTCTCGGACGTATGAAAGAAACTGCAGAGACCTAT 1229 Query 550378 TGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 | | ||| ||||||| | | || || || || ||||| || ||||| |||||| |||| Sbjct 1230 T-TAGGTAAAGAAGTCAAACACGCCGTTATCACAGTACCTGCTTATTTCAATGACGCACA 1288 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 ||||||||||||||||| || || |||||||| ||||| | |||||||| || Sbjct 1289 GAAGCAAGCTACTAAAGATGCCGGCGCCATCGCTGGACTGAATGTGGTGCGTATTATTAA 1348 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||| || || || ||||| ||||||| || Sbjct 1349 TGAGCCCACGGCCGCTGCTATTGCATACGG 1378 >seq753 Length=412 Score = 111 bits (122), Expect = 1e-18 Identities = 121/158 (77%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 ||| ||||| || ||||||||||| || || | |||||||| ||||| || ||||| || Sbjct 6 ATCCTCAAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGGATACCTTCCTT 65 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGTAA 563437 ||| ||||| || || || ||||||||||| || | |||| || || |||| Sbjct 66 ATCCTGAATCTTCGCCTTGACGTTATCAATTGTATCGCTGCTTTCTACA-TCAAGCGTAA 124 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| |||||||||||||||||||| || || |||||| Sbjct 125 TAGTCTTACCAGTAAGAGTTTTAACAAAGATCTGCATA 162 >seq27769 Length=1647 Score = 105 bits (116), Expect = 5e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 || |||||||| || ||||| ||||| || ||||| || || | ||||||| Sbjct 797 ACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCAAGTGTGCGGCCATCTTCA 856 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 || ||||| || ||||| || |||| |||||||| || || |||||||| || ||||| Sbjct 857 AGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGGGATTCCTTCCTTGTCTTGT 916 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAGTAACAGTTTT 563444 || || || || ||||| |||||| || || | || ||||| || | ||| || Sbjct 917 ATCTTGGCCTTCACATTATCAATCGTATCACTG-GACTCCACATCGAGGGTGATAGTCTT 975 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| || || || || ||||||||||| Sbjct 976 TCCAGTTAGTGTCTTCACAAAAATTTGCAT 1005 >seq37929 Length=3400 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || |||||||| |||||||| || || || || ||||| ||||| || || || Sbjct 1997 GCTGTCATCACTGTACCCGCATATTTCAACGATTCTCAGCGTCAGGCTACCAAGGACGCC 1938 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || ||||| || | ||||||||||| ||||| || |||||||| ||||| || Sbjct 1937 GGTGCCATCGCTGGTCTAGAGGTTCTTCGTATCATCAACGAGCCTACTGCCGCTGCTGTT 1878 Query 550520 GCATATGGACTTGATAA 550536 || || || |||||||| Sbjct 1877 GCCTACGGTCTTGATAA 1861 Score = 87.8 bits (96), Expect = 1e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 550013 ACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGAT 550072 |||||||| ||||| | || |||||||||| || ||||||||||||||||| ||| Sbjct 2384 ACCACATACTCGTGTGTGGCCGTGTGGCAAAATGACAAGGTTGAAATTATTGCCAACGAT 2325 Query 550073 CAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 || || ||| ||||||| ||||| | |||| | ||||| || Sbjct 2324 CAGGGAAACCGAACTACCCCATCATTTGTTGCCTTCACCGA 2284 >seq43121 Length=7161 Score = 96.9 bits (106), Expect = 3e-14 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || |||||||| || |||||||||| ||| |||||| || Sbjct 6365 ATCGGCATTGATCTTGGCACCACATACTCATGCGTTGGTGTTTTCCAACATGGTAGGGTG 6306 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || || ||||||||||||| ||| | || || || || || ||| ||||||| || Sbjct 6305 GAGATCATCTCCAATGATCAAGGAAACCGCACCACGCCCTCATACGTTGCTTTCACTGAC 6246 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 ||||| | || | || ||||| || || | || || ||||| || ||||| Sbjct 6245 ACTGAGCGACTATTAGGAGATGCGGCCAAGAACCAGATTGCTCTAAATCCGACGAATACG 6186 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | ||||||| ||||| || || || | | ||||| || | || ||||| ||| Sbjct 6185 GTGTTTGATGTCAAACGCTTGATAGGTCGGAAGTTTAACGACAGGGAAGTGCAGGCGGAT 6126 Query 550235 ATGAAGCA 550242 || || || Sbjct 6125 ATCAAACA 6118 >seq40476 Length=4508 Score = 91.5 bits (100), Expect = 1e-12 Identities = 189/280 (68%), Gaps = 20/280 (7%) Strand=Plus/Plus Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 |||||||| || ||| | || || || ||||||||||||||||| || | ||||| Sbjct 2608 AAGATTGACAAGAACAACATCCACGAGATCGTGCTTGTTGGTGGATCCACCCGTATTCCC 2667 Query 552153 AAAATTCGCGAAATGTTAAGTTCTTATT---TCAATGGTAAAAAATTAAATGAAAGTGTT 552209 || |||| | || | |||| ||| |||| ||| | | | || | | | Sbjct 2668 AAGATTCAGAAGCTGCT---TTCTGATTGGTTCAACGGTCGAGAGCTCAACCGATCTATC 2724 Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || ||||||||||| ||||||||||| || | || || ||||| ||||| || Sbjct 2725 AACCCCGATGAGGCTGTAGCCTATGGTGCGGCTGTACAGGCTGCTATCCTTTCAGG---- 2780 Query 552270 ACTGATGAAAAACTACAAAATATTGTACTTG-------TAGATGTTACTCCTCTATCTCT 552322 |||| || || | || ||| ||||| | |||||| | ||||||||||| Sbjct 2781 --TGAT-AAGCACGAGAACGTATCTGACTTGCTTCTGTTGGATGTTGCCCCTCTATCTCT 2837 Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 ||| | || || | |||||| ||||||| ||||||| Sbjct 2838 GGGTATTGAGACCGCCGGAGGTGTTATGACCGCTCTTATC 2877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026943432572650