Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq39701 214 3e-50 seq44045 91.5 3e-13 >seq39701 Length=4095 Score = 214 bits (236), Expect = 3e-50 Identities = 323/451 (72%), Gaps = 10/451 (2%) Strand=Plus/Plus Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 |||||||| ||||| || ||| ||||||||| |||||||||||||| |||| | ||| Sbjct 2340 GTGTTGGCTTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAATCTCCTCGAGCGCTTC 2399 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | | | ||||| || || ||||| || |||||||| |||||||| ||||| || Sbjct 2400 AGCGGTGAAGTACAAATCGCCGAGGCACGTTGCTTCTACGGATTCCAGATCGCCATTGAG 2459 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAG 25776 || | ||||||||| |||| ||| |||| | ||| ||||| ||| | ||| | Sbjct 2460 AACATCCACTCTGAGATGTACTCCACGCTTATCGAGACATACATCCGTGAC--CCCCGTG 2517 Query 25777 AGA--GATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGCGG 25833 ||| ||| || ||| || || ||| ||| ||| || |||||| ||||| Sbjct 2518 AGAAGGATAACCTATTTAACGCTATTGAG-ACACTCCCTGCCGTCAAGAAAAAGGCCGAC 2576 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||| | |||||||||||| | | | | | || || ||||| |||||||||| Sbjct 2577 TGGGCCCTCAAGTGGATCAACGACGATGCCTCCAGTTTCGGTGAGCGTGTGGTAGCCTTC 2636 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 ||||| || ||||| ||||||||| || || ||||| | ||||| ||| | ||| || Sbjct 2637 GCTGCAGTAGAGGGTATCTTTTTCTCTGGCTCCTTTGCCTCGATCTTTTGGATGAAGAAG 2696 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 ||| ||||| || || ||||| ||||| ||| | |||||||| || ||||| || Sbjct 2697 CGTGGGCTAATGCCTGGACT-AACTTTCTCCAATGAGTTGATCAGCAGAGATGAGGGACT 2755 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 |||| | || ||||| || ||| ||||||| Sbjct 2756 CCACTGTGACTTTGCTTGTCTG--CTACACG 2784 >seq44045 Length=9771 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 221100 CCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACA 221159 |||| | || |||| ||| || | ||||| ||||| |||||||| | | ||| | Sbjct 2897 CCTTCAGCAGATGCTGGTTGACAATCTGGAACTCTCCTGAGAGCACACGACGTGTGTAGA 2838 Query 221160 GGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGG 221219 ||| || ||| | || || ||||||||||| || ||||| |||||||| ||||| |||| Sbjct 2837 TGTTCGATGTGTAGGGCTCTATGCTCTCGTTATTACCCAGAATCTGAGCTGTGCTAGCGG 2778 Query 221220 TGGGCATGGGTGCCACCA 221237 | ||||| || || |||| Sbjct 2777 TAGGCATAGGGGCGACCA 2760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928328304238400