Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq42503 145 5e-29 seq27769 111 1e-18 seq43407 104 2e-16 seq36005 93.3 3e-13 seq37552 91.5 1e-12 seq753 89.7 3e-12 >seq42503 Length=6233 Score = 145 bits (160), Expect = 5e-29 Identities = 414/628 (66%), Gaps = 14/628 (2%) Strand=Plus/Minus Query 475546 TGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAA 475605 ||| ||| | ||||||||||| || || | |||| | ||| || || | ||| Sbjct 2584 TGTAGAAATCGATTCTCTTTTCGAGGGTACCGATTTCTACACTAGCATCACTCGAGCTCG 2525 Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665 ||||||||| || ||| | ||||| || | ||| | ||||| || || ||| | | Sbjct 2524 ATTTGAAGAAATGTGTGCCGATCTTTTCCGCGGCACACTAGAACCAGTGGAGAAAGCTTT 2465 Query 475666 CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 ||||| | ||| | ||||| || || |||| ||||| || ||||| ||||| || Sbjct 2464 ACGAGATGCGAAAATGGACAAGTCGAGTATCGATGAGATTGTGCTGGTAGGTGGTTCTAC 2405 Query 475726 AAGAATTCCAAAAATAAGAGAAATG-CTTTCATCATATTTTAATGGTAAAAAGTTAAATG 475784 | ||||| || || |||| | ||||| | || ||||||||| || | || Sbjct 2404 TCGTATTCCGAAGATTC-AGAAGTTACTTTCTGAGTGCTTCAATGGTAAAGAGCTGAACA 2346 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTAT 475844 | || | ||| |||||||| || |||||||| || || || || | || ||| | Sbjct 2345 AGAGCATCAATGTAGATGAAGCAGTCGCATATGGCGCCGCAGTTCAGGGTGCCATTCT-- 2288 Query 475845 CAGGTCAATCAGACGAGAAACTAAATA----ATATTGTACTTGTTGACGTAACTCCACTT 475900 |||| | | ||| | || | | || || | ||| | || || |||| | Sbjct 2287 CAGGGG--TGACACGCACAGCTCAGTCTCAGATCTTTTGCTTTTGGATGTCGCTCCGTTG 2230 Query 475901 TCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCT 475960 ||| | ||| |||| || | || || | ||||| || || | | || || | Sbjct 2229 TCAATGGGTATTGAGACCGCCGGTGGTGTGATGACCTCACTGATAAAGCGCAACACCACC 2170 Query 475961 AT-CCCATGCAAAA-AATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAA 476018 || |||| |||| || || | || ||||||||| |||| ||||| || |||| Sbjct 2169 ATTCCCA--CAAAGCAAACACAGACCTTCTCCACTTATGCTGACAATCAGCCAGCTGTGT 2112 Query 476019 CCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTT 476078 |||| || | | || ||||| || | || ||||| || |||| || || | | Sbjct 2111 CCATTCAGGTGTACGAGGGTGAGCGAGCCATGACGAAAGACAACCACAAGCTGGGCGCCT 2052 Query 476079 TTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTG 476138 || |||||| || ||| | ||||||||||||||| || || || |||||||| |||| Sbjct 2051 TTGATCTTGTCGGCATTACCCCTGCTCCCAGAGGAACACCCCAGATCGAAGTTACCTTTG 1992 Query 476139 ATATTGATGCAAATGGTATTCTTAATGT 476166 |||| ||||| |||||||| || || || Sbjct 1991 ATATCGATGCGAATGGTATACTCAACGT 1964 Score = 131 bits (144), Expect = 1e-24 Identities = 365/553 (66%), Gaps = 14/553 (3%) Strand=Plus/Minus Query 474331 AATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGT 474390 |||||| || ||| | || || |||||| || || | ||| | || |||| || || Sbjct 3415 AATTGGAATCGATCTCGGTACCACTTACTCATGCGTTGGTGTATTCCAGCATGGCAAGGT 3356 Query 474391 AGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGA 474450 || || || |||||||| ||||| || ||||||| || || || ||| |||| || || Sbjct 3355 TGAGATCATCGCCAATGATCAAGGCAACCGAACAACGCCCTCGTACGTTGCTTTCACAGA 3296 Query 474451 AACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATAC 474510 |||| | || | ||||| || ||||| ||||| || ||| || || || Sbjct 3295 CTCTGAGCGACTATTAGGAGACGCAGCTAAGAATCAAATCGCTCTTAACCCGCACAACAC 3236 Query 474511 TATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGA 474570 | || |||||||| | |||| || || || ||| |||| | || || | || Sbjct 3235 CGTGTTCGATGCTAAGCGTCTGATAGGCCGAAAGTTTAATGACAAAGAAGTGCAGGCAGA 3176 Query 474571 TATGCGTCA-TTGGCCTTTTAAGGTG---ATAAATGTTGGTGGTAAACCATATATAGAAG 474626 | || || || | || ||| || | || | | || ||| | || ||| Sbjct 3175 TGTGAAGCACTTCTCATTCGAAGTTGTGGAACAAAATAAG----AAGCCAGCTGTACAAG 3120 Query 474627 C--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684 | |||| | | ||||| || ||| | ||| || | || || || ||||| | Sbjct 3119 TGGAGTACATG--GCTGAAAAGAAGATATTCTTACCTGAGGAGATATCGTCTATGGTGCT 3062 Query 474685 AGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 ||||||||||| |||| || ||| | ||| | ||| |||| || || || || | Sbjct 3061 GACCAAAATGAAAGAAACGGCAGAGG-CTTATTTGGGAACTAAAGTGACAGACGCCGTGA 3003 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | || || ||||||||||| |||||||| ||| | ||| || || ||||| || | Sbjct 3002 TCACGGTGCCAGCATATTTCAATGATTCACAAAGGCAAAGTACAAAGGATGCTGGGGCTA 2943 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | || ||||| ||||| ||||||| || || || || ||||| || || |||| || | Sbjct 2942 TCGCTGGTCTAAATGTGCTACGTATAATCAACGAGCCCACAGCCGCTGCGATTGCGTACG 2883 Query 474864 GTCTTGATAAGAA 474876 |||| || ||||| Sbjct 2882 GTCTGGACAAGAA 2870 >seq27769 Length=1647 Score = 111 bits (122), Expect = 1e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 480564 ACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCA 480623 || |||||||| || ||||| | |||||| ||||| || || | | ||||||| Sbjct 797 ACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAGCAAGTGTGCGGCCATCTTCA 856 Query 480624 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGA 480683 || || || |||||||| || || || || ||||| || || ||||||||||||||||| Sbjct 857 AGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGGGGATTCCTTCCTTGTCTTGT 916 Query 480684 ATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||| || ||| ||||| |||||| || || ||||| ||||| || Sbjct 917 ATCTTGGCCTTCACATTATCAATCGTATCACTGGACTCCACATCGAGGGTGATAGTCTTT 976 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || |||||||| Sbjct 977 CCAGTTAGTGTCTTCACAAAAATTTG 1002 >seq43407 Length=7713 Score = 104 bits (114), Expect = 2e-16 Identities = 347/535 (65%), Gaps = 4/535 (1%) Strand=Plus/Plus Query 475640 ACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCAT 475699 ||| | ||||| || ||| | | | ||||| | || ||||||| ||| || || Sbjct 5316 ACACTGGAACCAGTAGAAAAGGCATTGCGAGATGCAAAGTTTGACAAGTCAAGTATCGAT 5375 Query 475700 GAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA 475759 ||||| || || || || ||||| || | |||||||| || ||||| || | | Sbjct 5376 GAAATCGTACTGGTTGGCGGTTCCACCCGTATTCCAAAGATTC-AGAAACTATTGTCTGA 5434 Query 475760 T-ATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGG 475818 | | || || || ||| || | || | || | || ||||| || || || ||||| Sbjct 5435 TTACTTCAACGGCAAAGAGCTGAACAAGAGCATCAACGTGGATGAGGCCGTAGCCTATGG 5494 Query 475819 AGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAAC-TAAATAATATTG 475877 ||| |||||||||| ||| ||| | ||| | ||||| || | | | || | Sbjct 5495 AGCGGCTGTCCAAGGAGCCATTCTGAGAGGCGACACAGAC-AGCGCCGTCAGCGATCTGC 5553 Query 475878 TACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTA 475937 |||| | ||||| | || || || | ||| | || || | || || | |||||| Sbjct 5554 TACTACTGGACGTGGCACCCCTATCTATGGGTATAGAGACTGCCGGTGGAGTGATGACTT 5613 Query 475938 ATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATT 475997 | || | | || || | ||||| || | || | |||||||| || Sbjct 5614 CCTTAATCAAGCGCAACACCACCATCCCCACGAAGCAGACACAGACCTTTTCCACATACG 5673 Query 475998 CTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAG 476057 |||| |||||| || | || | || || | | || |||||| || | || || | Sbjct 5674 CTGACAATCAACCAGCGGTGTCTATTCAGGTTTACGAGGGTGAACGAGCCATGACAAAGG 5733 Query 476058 ATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTC 476117 | || |||| | || | ||| | ||| |||||| | ||||||||||||||| | Sbjct 5734 ACAACCACAAGTTGGGTGCCTTTGACCTTACTGGTATTGCCCCTGCTCCCAGAGGAACAC 5793 Query 476118 CTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 | || ||||| || || |||||||| ||||| |||||||| |||||||| |||| Sbjct 5794 CCCAGATTGAGGTCACCTTTGATATCGATGCTAATGGTATCCTTAATGTGTCTGC 5848 Score = 102 bits (112), Expect = 5e-16 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 474659 CCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCT 474717 || ||| | || || |||||||| | | || ||||| |||| || ||| | || || Sbjct 4719 CCTGAAGAGATATCCTCAATGGTGCTGACAAAGATGAAGGAAACGGCCGAGG-CTTA-CT 4776 Query 474718 TGG--ACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAA 474775 ||| || | |||| || || || || |||||||| || |||||||| |||||||||||| Sbjct 4777 TGGGAACCA-AAGTGACCGACGCTGTGATTACTGTGCCTGCATATTTCAATGATTCTCAA 4835 Query 474776 CGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAAT 474835 | ||| || || ||||| || || |||||||| || || ||||||| || || Sbjct 4836 AGGCAAAGTACAAAGGATGCTGGGGCTATCGCAGGTCTGAACGTGCTACGTATCATCAAC 4895 Query 474836 GAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || ||||| || || || |||| ||||| | || ||||| Sbjct 4896 GAGCCAACGGCTGCTGCGATTGCCTATGGATTGGACAAGAA 4936 >seq36005 Length=2846 Score = 93.3 bits (102), Expect = 3e-13 Identities = 358/549 (65%), Gaps = 19/549 (3%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 || ||| || |||||| | || ||||| || || || ||| | | | || |||| Sbjct 839 TGTAATCGGCATTGATCTCGGTACTACCTATTCATGCGTTGCTATCTATGATAACGGTAG 898 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||||| ||||| ||||||| |||||||| || | |||||| || ||||| ||||| Sbjct 899 GGTAGACATAATACCCAATGATCAAGGTAACAGGATAACACCTTCGTATGTGGGGTTTAC 958 Query 474448 TGAAACTGAACATC---TTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTG 474503 | | | | | | || |||||||||||||| ||| ||||| | || ||||| Sbjct 959 GGCCGAGGGAGAGCGATTAATCGGAGATGCTGCTAAGAATC-AGCTGACCTCGAATCCGA 1017 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 |||||| | || || || || | ||| | || ||| | | |||||| | ||||||| Sbjct 1018 AAAATACTGTATTCGACGCAAAGCGGTTGCTCGGACGTGACTGGGATGATGCAACTGTCC 1077 Query 474564 AATCTGATATGC--GTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT 474621 || ||| || || || |||| | | | ||| || || ||| || Sbjct 1078 AACACGAT-CGCAAGTACTTTCCCTTCGATCTAGTTGAAT-CCGGAAACAAGCCAAGGAT 1135 Query 474622 AGAAGCAATACAC-GC---AGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAA 474677 ||| |||| || ||||| | | || | ||||| || |||| || | | Sbjct 1136 -TAAGGTGGACACAGCTATCGGTGAGAAGATAC---TGTCACCTGAGGAAATCTCAGCTA 1191 Query 474678 TGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGAT 474736 ||||| | | |||||| |||| || ||| | ||| | || ||||||| | | Sbjct 1192 TGGTTCTCGGACGTATGAAAGAAACTGCAGAG-ACCTATTTAGGTAAAGAAGTCAAACAC 1250 Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || || || || || || ||||| ||||| | || ||||| ||||||||||| Sbjct 1251 GCCGTTATCACAGTACCTGCTTATTTCAATGACGCACAGAAGCAAGCTACTAAAGATGCC 1310 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || || || || || ||||| | |||||||||||||| || || || || || || Sbjct 1311 GGCGCCATCGCTGGACTGAATGTGGTGCGTATTATTAATGAGCCCACGGCCGCTGCTATT 1370 Query 474857 GCTTATGGT 474865 || || ||| Sbjct 1371 GCATACGGT 1379 >seq37552 Length=3269 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| | ||||| ||||| ||| || || || || ||||| || || || Sbjct 3026 CGGAGACGCAACACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTA 3085 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| |||||||||||||| || || | ||| || |||||||| || || || Sbjct 3086 CGTCCATCTTCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGGGGGATGCCC 3145 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAG 480730 ||||| || |||||||| || ||| || || |||||| | | | | | ||| Sbjct 3146 TCCTTATCCTGAATCTTAGCCTTCACATTATCGATGGTATCACTCGATTCGACATCCAA- 3204 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||||||||| || || || || Sbjct 3205 GGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTG 3243 >seq753 Length=412 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || || || || | ||| ||||| || || || ||| || || ||||| || Sbjct 168 ACGCAGTCGAAGAACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGGCTAGTGT 227 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||||||||||||||||| | ||| || ||||||||||| || || Sbjct 228 ACGTCCATCTTCCAACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAGGGATACC 287 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||| || || || || || ||| || |||||||| | | | || || Sbjct 288 CTCCTTATCCTGGATTTTAGCCTTCACATTATCGATAGTATCGCTAGATTCAACATCCAG 347 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||||||||| || || || || Sbjct 348 GGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTG 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266271022508780