Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq27769 143 5e-29 >seq27769 Length=1647 Score = 143 bits (158), Expect = 5e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 || ||||| || ||||| | ||| || ||| |||||||||| || || || | || Sbjct 566 AAAACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCC 625 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 || ||||||||||| || ||||||| || ||| ||||| |||||||| ||||| |||||| Sbjct 626 TCTAATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGTATGCCTTCCTTATCT 685 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 ||||||||| ||| |||||| ||||| ||| || || || || | || || || Sbjct 686 TGTATTTTAACTTTCACATTATCTATAGTATCACTAGACTCGACATCCAACGTGATAGTC 745 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| | || || | ||||||||||| Sbjct 746 TTACCAGTGAGCGTCTTGACGAATATCTGCAT 777 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| | |||||| || | ||| | ||| | |||||| |||||||| ||| Sbjct 776 ATACCACCTCGCAAACGTAAAACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCA 835 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| || | ||||||||||||||||| | || ||| ||||| || Sbjct 836 GCAAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGG 895 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || |||||||| || || |||||| || | ||| || || Sbjct 896 GGGATTCCTTCCTTGTCTTGTATCTTGGCCTTCACATTATCAATCGTATCACTGGACTCC 955 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || || || ||||||| ||| || | ||| || ||||| || Sbjct 956 ACATCGAGGGTGATAGTCTTTCCAGTTAGTGTCTTCACAAAAATTTGCATGTT 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983918881779750