Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq44045 120 9e-22 seq39701 107 6e-18 >seq44045 Length=9771 Score = 120 bits (132), Expect = 9e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || || |||||||||||||| ||||| | |||||||||||| ||||||| |||||| Sbjct 2260 GTACTCGACGATCTCACAGCACAGATTAGAGCACTTGATGGTGCCCAAATTCTGCTGGTT 2201 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 | || | ||| || ||||||||||| || |||||||| || || ||||| |||| || Sbjct 2200 ACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCGGTCTGCGC 2141 Query 155750 GTCCAGAAT 155758 || ||||| Sbjct 2140 CTCTAGAAT 2132 >seq39701 Length=4095 Score = 107 bits (118), Expect = 6e-18 Identities = 285/430 (66%), Gaps = 4/430 (1%) Strand=Plus/Plus Query 133229 TTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATG 133288 || || || || ||||| |||||||||||||| || ||| | || || | Sbjct 2343 TTGGCTTTCTTCGCTGCCAGTGATGGTATTGTGAACGAGAATCTCCTCGAGCGCTTCAGC 2402 Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 || ||||| ||| | ||||| || ||| ||| || || | ||||| || || || || Sbjct 2403 GGTGAAGTACAAATCGCCGAGGCACGTTGCTTCTACGGATTCCAGATCGCCATTGAGAAC 2462 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 ||||| ||| | || || || || || || || |||||| || || ||||| Sbjct 2463 ATCCACTCTGAGATGTACTCCACGCTTATCGAGACATACATCCGTGACCCCCGTGAGAAG 2522 Query 133409 CACAAACTATTCAACGCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGC 133467 | || ||||| ||||| ||| | || | | ||| | || || || | |||||||| Sbjct 2523 GATAACCTATTTAACGCTATT-GAGACACTCCCTGCCGTCAAGAAAAAGGCCGACTGGGC 2581 Query 133468 TATTAAATGGATCCAGGAC-AAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTG 133526 | || |||||| | ||| | || | | ||||| | | ||| | || || || |||| Sbjct 2582 CCTCAAGTGGATCAACGACGATGCCT-CCAGTTTCGGTGAGCGTGTGGTAGCCTTCGCTG 2640 Query 133527 TAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTG 133586 ||||||||| || |||||| ||| | || ||| || |||||| | || ||||||| Sbjct 2641 CAGTAGAGGGTATCTTTTTCTCTGGCTCCTTTGCCTCGATCTTTTGGATGAAGAAGCGTG 2700 Query 133587 GTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACA 133646 | | | |||||||| ||| || || || | || || || |||| ||| ||| Sbjct 2701 GGCTAATGCCTGGACTAACTTTCTCCAATGAGTTGATCAGCAGAGATGAGGGACTCCACT 2760 Query 133647 CCGAATTTGC 133656 || ||||| Sbjct 2761 GTGACTTTGC 2770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470978716861445