Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq39701 131 2e-24 seq40530 107 2e-17 seq44045 93.3 5e-13 seq37913 91.5 2e-12 >seq39701 Length=4095 Score = 131 bits (144), Expect = 2e-24 Identities = 221/316 (70%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| |||||||||||||| ||||| ||| | |||| || | ||| Sbjct 2470 GAGTGGATGTTCTCAATGGCGATCTGGAATCCGTAGAAGCAACGTGCCTCGGCGATTTGT 2411 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||| || || || |||||| ||| || || || ||||| ||||| Sbjct 2410 ACTTCACCGCTGAAGCGCTCGAGGAGATTCTCGTTCACAATACCATCACTGGCAGCGAAG 2351 Query 869753 AAAGCCAGGACGTGCTTGATAA--AGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--G 869808 ||||||| || || ||||| ||||||||||| | || | || | |||||| | Sbjct 2350 AAAGCCAACACATGG--GATAAGAAGTGGCGCTCGCCATCCTTAAGGTTCTCCCAGTCAG 2293 Query 869809 GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 | | || | || || |||||||| | ||||||| || ||||| ||||| || Sbjct 2292 CTAGATCACGAGAC--AGATCAACCTCCTCAACAGTCCAGAAAGAAGCCTCCGCCTTCTT 2235 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 |||||||| ||| | | |||||| |||||||||| || || ||||| ||||| || Sbjct 2234 GTACATCTGCCAGATCTCCTGGTATTGGATAGGGAATAGCACGAAGCGACGAGGGTTTTC 2175 Query 869929 GCGCAACAGGGGTTCG 869944 | | ||||| ||| Sbjct 2174 TCTGAGGAGGGGCTCG 2159 Score = 102 bits (112), Expect = 1e-15 Identities = 160/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 869192 CTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAG 869251 ||||||| || ||| || | || || ||||| || || |||||||| | ||||||| Sbjct 2740 CTGATCAACTCATTGGAGAAAGTTAGTCCAGGCATTAGCCCACGCTTCTTCATCCAAAAG 2681 Query 869252 ATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGC 869311 || | | || ||| ||||||||||| ||||| || || || ||| | | | ||| Sbjct 2680 ATCGAGGCAAAGGAGCCAGAGAAAAAGATACCCTCTACTGCAGCGAAGGCTACCACACGC 2621 Query 869312 TCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 || | || || |||| | || | |||||||||||| | |||||||||||||||||| Sbjct 2620 TCACCGAAACTG--GAGG-CATCGTCGTTGATCCACTTGAGGGCCCAGTCGGCCTTTTTC 2564 Query 869372 CTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 | || | || | || || || ||| ||| |||| ||||| || Sbjct 2563 TTGACGGCAGGGAGTGTCTCAATAGCGTTAAATAGGTTATCCTTCTC 2517 >seq40530 Length=4541 Score = 107 bits (118), Expect = 2e-17 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1592164 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCT 1592223 ||| ||||||||||||||||| || ||||||||||||||||||||| ||||||| || || Sbjct 526 CACTCTCTTTGAGTTGATCCTGGCAGCCAACTACCTCGACATCAAGTCTCTGCTGGACCT 585 Query 1592224 TGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCC 1592265 |||||| ||||||| || ||||| ||||| | ||| || Sbjct 586 CACCTGCAAGACTGTGGCAAATATGATTAAGGGTACGTCTCC 627 >seq44045 Length=9771 Score = 93.3 bits (102), Expect = 5e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1628105 ACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACT 1628164 |||| |||||||||| | | ||| || || |||||||| ||| || || ||| Sbjct 2315 ACTTAGGCAGGGCCAGGGACGCAAGATTACACACAGCCACTTCGTCGGGGGAAGAGTACT 2256 Query 1628165 GGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGG 1628224 ||||||||| |||||| || | || | | || |||| ||||||||||| | Sbjct 2255 CGACGATCTCACAGCACAGATTAGAGCACTTGATGGTGCCCAAATTCTGCTGGTTACTCT 2196 Query 1628225 TCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGA 1628284 | ||||| || ||||||| |||||||| || | |||||||||| |||||||| | | Sbjct 2195 TGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTGCCGGTCTCGGTCTGCGCCTCTA 2136 Query 1628285 CGATGGCCGACCAGATCTG 1628303 ||||| |||| | ||| Sbjct 2135 GAATGGCGAACCACAGCTG 2117 Score = 91.5 bits (100), Expect = 2e-12 Identities = 178/260 (68%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| |||||||| || |||| ||| || || || ||||| ||||| || ||||| || Sbjct 1818 TGGTCAACGTAGCGTGCGGTGTTGTTGAATACACGCAGCATAGGCACAAGTCCGTTAGAG 1759 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | || ||||| || || | |||| | || | | |||||| || | ||| Sbjct 1758 TTTCCATTGGTTCCAGCGATGTAGCTTTCTTTGGATCTGATCTTGTGAACGTTGAGTCCG 1699 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| ||||||||| | |||||| || || |||| |||||| || || Sbjct 1698 ATACCTCCGGCACTCTTGGAGATCATCGCGCAGGTCTTCAGGGTGTTGTAGATACCTTCA 1639 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTG-CGCC--GTG 1630302 || |||||| ||| || | || || ||||| || | || || | || | ||| Sbjct 1638 ATGGAGTCGTCCTCGATTGTGAGAAGGAAACACGATGA---TAGCTGGGGACGTCTTGTG 1582 Query 1630303 CCGGCGTTGAAGAGCGTGGG 1630322 ||||||||||| || || || Sbjct 1581 CCGGCGTTGAACAGGGTAGG 1562 >seq37913 Length=3395 Score = 91.5 bits (100), Expect = 2e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1574056 ACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGG 1574115 || |||| | || || || || ||||| ||||| ||||||||||| || | ||| || Sbjct 2410 ACTTGCCCGCTGGCCGACATAAAGTGATTATCCTTGACGAGGCCGATAGCATGACGGAGG 2469 Query 1574116 CGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCC 1574175 || ||||| || ||||| ||||||||| | || ||||||| || |||||||||| Sbjct 2470 GTGCTCAGCAAGCGCTGCGCCGCACCATGGAGATCTACTCCAACACAACCCGCTTTGCCC 2529 Query 1574176 TGGCGTGCAA 1574185 |||| ||||| Sbjct 2530 TGGCCTGCAA 2539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103488552576745