Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq44045 143 2e-29 seq753 123 2e-23 seq37552 104 2e-17 seq27769 96.9 3e-15 >seq44045 Length=9771 Score = 143 bits (158), Expect = 2e-29 Identities = 813/1283 (63%), Gaps = 37/1283 (3%) Strand=Plus/Minus Query 138571 TCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAA 138630 ||||| || |||||||||||||| ||| | ||||| ||||| || |||||||| ||| Sbjct 2811 TCGTTATTACCCAGAATCTGAGCTGTGCTAGCGGTAGGCATAGGGGCGACCAAAAGTGAA 2752 Query 138631 TTCCGTAAACCGTG--AAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGC 138688 || | | |||| |||| || | ||||||| | | ||| || ||| Sbjct 2751 TTTCTGAGTCCGTATAAAGCCATATCC--TCCTTGACCTTAGCCCAATCGTGTCTATCCG 2694 Query 138689 TAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGT 138748 || | |||||||||| |||| || || ||| || || || || ||| Sbjct 2693 AGGGGACAACATCCCACATATCGAACTGCAAGATACCCTTGCTCGCTGGGGAACCAGCGT 2634 Query 138749 ACGAATCGTATACACCAAAC-TCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAG 138807 | | ||||| ||| | ||||| || | | | | ||| || | ||||| ||| Sbjct 2633 AGGTCTCGTAAGGACCCTCCCTCTTG-GCAATCGCAATACTCTCCGTCACCGCACTGTAG 2575 Query 138808 TAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATG 138867 || ||||| ||| || |||| || |||| || || |||| ||| ||| | |||| | Sbjct 2574 TAGATAGTCTCGAAGATGTGCTTGTTCAGCACGCGTGCATCGGGGCTATCGAATGGCAGG 2515 Query 138868 CGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGC 138927 || | || |||||||||| || || ||||| || || | |||| ||| || |||||| Sbjct 2514 CGCATCAAGATGAACGCGTCTGCAAGGCCTTGTACACCTAGACCGATAGGTCGGTGGCGC 2455 Query 138928 AGATTTGACGCTTTTGCGGCTTCG---ATAGGATAATAGTTTACATCGATGATTTTGTTT 138984 || || ||| | | ||||| | ||| |||||||| || ||||||||||||||| Sbjct 2454 TTGTT--ACTCTTCT-CAGCTTCAGGCACAGGGTAATAGTTGACGTCGATGATTTTGTTT 2398 Query 138985 AAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCG 139044 | ||| ||| | | | | || | || | |||| ||| | | ||| Sbjct 2397 AGATTGCGCGTGGCTATTCTGGTGACCTCCTCGAGCTTCACAAAGTCGAACTCGGGGCCG 2338 Query 139045 TTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCC 139104 || | || || | ||| | || | | || || | || ||||| ||| Sbjct 2337 TTTGCTCCGTCGGTCTTGACGTACTTAGGCAGGGCCAGGGACGCAAGATTACACACAGCC 2278 Query 139105 ACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTA 139164 |||||||||||| ||| ||||| || || |||| |||| |||||||| || Sbjct 2277 ACTTCGTCGGGGGAAGAGTACTCGACGATCTCACAGCACAGATTAGAGCACTTGATGGTG 2218 Query 139165 CCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTG 139224 || ||||| || || || || || ||||| || ||||| ||||| ||||| || |||||| Sbjct 2217 CCCAAATTCTGCTGGTTACTCTTGCGGTTGCACGCATCCTTGTACAGCATGTATGGTGTG 2158 Query 139225 CCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACGC 139284 || || || || | ||||| |||| ||| | | || | ||| || | Sbjct 2157 CCGGTCTCGGTCTGCGCCTCTAGAATGGCGAACCACAGCTGCTGTGCCTTGATT--ACTC 2100 Query 139285 ACGTAAAGTT--CGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTT--CACCGT 139339 | || | | |||||||||||||| | ||| || || || || || || | | | Sbjct 2099 GCTTAGCTCTACCCTCGCGCTCGTACTTGTGGTATAGATCTTCAAACTCCTTTCCCCAGA 2040 Query 139340 AGGCGTC--AGAAAGATCGCGACACTT-GTCAGGACACATGAGCGACCATACGCCGTTCG 139396 |||| || | | || ||||| || || || || ||| | ||| ||| Sbjct 2039 CATCGTCCAAGCCTGGT-GCATCACTTGGTGAGAAC-----AGACTCCACTCTCCG-TCG 1987 Query 139397 CCTTGACGCGCC---TCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCG 139453 ||| ||| || ||| || ||||| ||||||| |||| | | ||| || | Sbjct 1986 GCTT--CGCACCGTTCCATAAATAGATCGTTGATCCACAGGCCGAAGAAAAGATCACGTG 1929 Query 139454 CCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGT 139513 | | | || || ||||| |||| || | | ||||| ||||| | || |||| Sbjct 1928 CGCGCATCTCCTCTGAACCTGTGTTCTTCTTTAGATCCAGGAACTCAAAGATATCTGCGT 1869 Query 139514 GCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGT 139570 |||| || || || || || || | ||| || || ||| |||||||| || |||| Sbjct 1868 GCCAGGGCTCTAGGTACATTGCAAATGCTCCAGGACGCTTGTTACCACCTTGGTCAACGT 1809 Query 139571 GTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGG 139630 ||| | | || |||||||| |||| ||| ||| | || ||| | | |||| |||| Sbjct 1808 AGCGTGCGGTGTTGTTGAATACACGCAGCATAGGCACAAGTCCGTTAGAGTTTCCATTGG 1749 Query 139631 TGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGC 139690 | | | |||| || | | || || | || || |||| ||||| || ||| Sbjct 1748 TTCCAGCGATGTAGCTTTCTTTGGATCTGATCTTGTGAACGTTGAGTCCGATACCTCCGG 1689 Query 139691 CAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGT 139750 || ||||| || | |||| | || | ||| |||||| ||| ||||| Sbjct 1688 CACTCTTGGAGATCATCGCGCAGGTCTTCAGGGTGTTGTAGATACCTTCAATGGAGTCGT 1629 Query 139751 CCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACA 139810 ||| || |||| || || || || || || || || || | |||||||| |||| Sbjct 1628 CCTCGATTGTGAGAAGGAAACACGATGATAGCTGGGGACGTCTTGTGCCGGCGTTGAACA 1569 Query 139811 GAGTAGGACTCGCGTGCGTGAAC 139833 | ||||| ||||| || ||| Sbjct 1568 GGGTAGGTGAAGCGTGTGTAAAC 1546 >seq753 Length=412 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| ||||||| || || ||||| ||||||||||| || |||||| || | Sbjct 161 ATGCAGATCTTTGTTAAAACTCTTACTGGTAAGACTATTACGCTTGATGTAGAAAGCAGC 102 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || ||||| || || || ||||| || ||||| ||||| Sbjct 101 GATACAATTGATAACGTCAAGGCGAAGATTCAGGATAAGGAAGGTATCCCTCCGGATCAG 42 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || ||||||||||||| || ||||| |||||| Sbjct 41 CAGCGCCTGATCTTTGCCGGAAAGCAGCTTGAGGAT 6 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || ||| | | | Sbjct 389 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCCTGGATGTTGAATCTAGC 330 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || || ||||| || || || || || ||||| ||||| Sbjct 329 GATACTATCGATAATGTGAAGGCTAAAATCCAGGATAAGGAGGGTATCCCTCCTGATCAG 270 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || ||||| || ||||| || || ||| |||| || | || ||| | | || || || Sbjct 269 CAGCGTTTAATTTTTGCTGGAAAGCAGTTGGAAGA-TGGACGTACACTAGCCGACTACAA 211 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || ||||| || ||||| | ||| |||| || || Sbjct 210 TATTCAGAAGGAGTCAACACTGCATTTGGTTCTTCGACTGCGTGGTGG 163 >seq37552 Length=3269 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || | || || ||| | | Sbjct 3246 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCTTGGATGTCGAATCGAGT 3187 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || || || || || || || || ||||| Sbjct 3186 GATACCATCGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATCCCCCCTGATCAG 3127 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || || || ||||| ||| | | | || | ||||| ||| Sbjct 3126 CAGCGTTTGATCTTCGCTGGAAAGCAACTGGAAGATGGACGTACCCTGGCCGATTACAAC 3067 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || ||| | |||||||| | |||||||| Sbjct 3066 ATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCGTCTCCGCGGAGG 3020 >seq27769 Length=1647 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| || ||||| ||||| ||| | || || || | | Sbjct 777 ATGCAGATATTCGTCAAGACGCTCACTGGTAAGACTATCACGTTGGATGTCGAGTCTAGT 718 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| | || ||| || || ||||| || ||||| ||||| || ||||| Sbjct 717 GATACTATAGATAATGTGAAAGTTAAAATACAAGATAAGGAAGGCATACCACCAGATCAG 658 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || ||||| | ||||| | | || | ||||||||| Sbjct 657 CAGCGACTAATCTTCGCAGGTAAACAATTAGAGGACGGCCGTACTTTGGCTGATTATAAC 598 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 || |||||||| || || | ||||| || ||| |||| Sbjct 597 ATCCAAAAGGAGTCCACTTTGCACTTAGTTTTGAGATT 560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449647428815800