Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq39701 156 7e-32 seq41229 95.1 2e-13 seq43563 93.3 7e-13 seq40530 86.0 1e-10 >seq39701 Length=4095 Score = 156 bits (172), Expect = 7e-32 Identities = 227/317 (72%), Gaps = 9/317 (3%) Strand=Plus/Minus Query 794353 CTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAG 794412 |||||||| || ||| || || || ||||| || || |||||||| | ||||||| Sbjct 2740 CTGATCAACTCATTGGAGAAAGTTAGTCCAGGCATTAGCCCACGCTTCTTCATCCAAAAG 2681 Query 794413 AT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGC 794469 || |||| || | ||| ||||||||||| ||||| || || || ||| | || | Sbjct 2680 ATCGAGGCAAAGGA---GCCAGAGAAAAAGATACCCTCTACTGCAGCGAAGGCTACCACA 2624 Query 794470 CGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTT 794529 ||||| | ||| || |||| || | |||||||||||| | ||||| || |||||| Sbjct 2623 CGCTCACCGAAACTGG--AGGCA-TCGTCGTTGATCCACTTGAGGGCCCAGTCGGCCTTT 2567 Query 794530 TTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCC 794589 ||| | || | || | || || || ||| ||| |||| |||||||| ||||| Sbjct 2566 TTCTTGACGGCAGGGAGTGTCTCAATAGCGTTAAATAGGTTATCCTTCTCACGGGGGTCA 2507 Query 794590 TTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATC 794649 || ||| || ||||| || ||||| |||| ||||||||||| || ||||||||| Sbjct 2506 CGGATGTATGTCTCGATAAGCGTGGAGTACATCTCAGAGTGGATGTTCTCAATGGCGATC 2447 Query 794650 TGGAAGCCATAAAAGCA 794666 ||||| || || ||||| Sbjct 2446 TGGAATCCGTAGAAGCA 2430 >seq41229 Length=5014 Score = 95.1 bits (104), Expect = 2e-13 Identities = 82/101 (81%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 2073658 CCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCC 2073717 ||||||||||||||| ||||||||| |||| || | |||||||||||||||||||| Sbjct 1631 CCGATGCCGCCGGCCCGCTTGGAGATCTGCGCACAGTCCGTCAGCGTCTCGTAGATGCCC 1572 Query 2073718 TCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGA 2073758 || |||||| || |||| ||| ||| ||||||||||| Sbjct 1571 GTGAGCGAGTCCGC---CATGCCCAGCAGGAAGCACGACGA 1534 >seq43563 Length=8015 Score = 93.3 bits (102), Expect = 7e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||||||||| || || |||||| ||||||| || ||| | | Sbjct 3717 TGTACTTGGTGACAGCCTTGGTACCCTCAGAAACAGCGTGCTTGGCCAGCTCTCCGGGGA 3776 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 | ||| || ||||| ||||||||||| | || | ||| ||| Sbjct 3777 GAAGCAGACGAACGGCAGTCTGGATCTCTCTGGAGGAGATGGTG 3820 >seq40530 Length=4541 Score = 86.0 bits (94), Expect = 1e-10 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 2035625 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTT 2035684 ||| ||||||||||||||||| || ||||||||||||||||||||| | || || || | Sbjct 526 CACTCTCTTTGAGTTGATCCTGGCAGCCAACTACCTCGACATCAAGTCTCTGCTGGACCT 585 Query 2035685 GGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCC 2035726 |||||||| ||||| || | || ||||| | ||| || Sbjct 586 CACCTGCAAGACTGTGGCAAATATGATTAAGGGTACGTCTCC 627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7911514327653915