Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq27769 91.5 1e-13 >seq27769 Length=1647 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || || || || || || | || ||| || | Sbjct 777 ATGCAGATATTCGTCAAGACGCTCACTGGTAAGACTATCACGTTGGATGTCGAGTCTAGT 718 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| || || ||||| |||||| | || |||||| Sbjct 717 GATACTATAGATAATGTGAAAGTTAAAATACAAGATAAGGAAGGCATACCACCAGATCAG 658 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| || | || |||||||| | ||||||| | || |||| || || ||| Sbjct 657 CAGCGACTAATCTTCGCAGGTAAACAATTAGAGGACGGCCGTACTTTGGCTGATTATAAC 598 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 || ||||||||||| || |||||| | || |||||||| |||| ||| Sbjct 597 ATCCAAAAGGAGTCCACTTTGCACTTAGTTTTGAGATTAAGAGGCGGA 550 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || |||||||||||||| || || |||| || || || || ||| |||| |||| | Sbjct 1008 AACATGCAAATTTTTGTGAAGACACTAACTGGAAAGACTATCACCCTCGATGTGGAGTCC 949 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | ||||| | | | || || ||||| || || ||||| | ||| ||| Sbjct 948 AGTGATACGATTGATAATGTGAAGGCCAAGATACAAGACAAGGAAGGAATCCCCCCCGAT 889 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| |||| || | ||| ||||||||||| || || | | ||| | || ||||| Sbjct 888 CAGCAGCGACTGATCTTTGCTGGTAAACAGCTTGAAGATGGCCGCACACTTGCTGACTAT 829 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || || ||||| || | || | || || | |||||||| || Sbjct 828 AATATACAGAAAGAGTCAACTCTTCATCTCGTTTTACGTTTGCGAGGTGG 779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398660544580165