Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sphaeroforma_20sirkka_20[genbank_20GCA_5F001586965.1_202016-03-11] 44,485 sequences; 85,494,527 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq27769 179 7e-40 seq753 134 3e-26 seq38696 95.1 2e-14 >seq27769 Length=1647 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| || | || ||||||||||| ||| || || || || || |||||||||| Sbjct 551 CCGCCTCTTAATCTCAAAACTAAGTGCAAAGTGGACTCCTTTTGGATGTTATAATCAGCC 610 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | ||||| |||| |||||| || || |||||||||| || |||||||| ||| Sbjct 611 AAAGTACGGCCGTCCTCTAATTGTTTACCTGCGAAGATTAGTCGCTGCTGATCTGGTGGT 670 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||||||||| || || |||| ||||| || || |||||| ||| || || Sbjct 671 ATGCCTTCCTTATCTTGTATTTTAACTTTCACATTATCTATAGTATCACTAGACTCGACA 730 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || | |||||| || ||||||||||| Sbjct 731 TCCAACGTGATAGTCTTACCAGTGAGCGTCTTGACGAATATCTGCAT 777 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| |||||| | ||| | || ||||| || ||||||||||||||||| |||| Sbjct 777 TACCACCTCGCAAACGTAAAACGAGATGAAGAGTTGACTCTTTCTGTATATTATAGTCAG 836 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || ||||| || ||||| ||||||||||| |||| || ||||| || | Sbjct 837 CAAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCAAAGATCAGTCGCTGCTGATCGGGGG 896 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||| ||||| || || ||||| |||||||||||| | | || | Sbjct 897 GGATTCCTTCCTTGTCTTGTATCTTGGCCTTCACATTATCAATCGTATCACTGGACTCCA 956 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| || || | ||||| ||||| || ||||| Sbjct 957 CATCGAGGGTGATAGTCTTTCCAGTTAGTGTCTTCACAAAAATTTGCAT 1005 >seq753 Length=412 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || ||||| || ||||| || || || ||||| ||||| || || | Sbjct 161 TACCACCACGCAGTCGAAGAACCAAATGCAGTGTTGACTCCTTCTGAATATTGTAGTCGG 220 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || ||||| | || ||||||||||| |||| | || ||||| |||| Sbjct 221 CTAGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAAATTAAACGCTGCTGATCAGGAG 280 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || |||||||| || || || || || ||||| || || ||||| ||| ||| | Sbjct 281 GGATACCCTCCTTATCCTGGATTTTAGCCTTCACATTATCGATAGTATCGCTAGATTCAA 340 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||| || || | ||||| ||||| |||||||| Sbjct 341 CATCCAGGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 389 Score = 107 bits (118), Expect = 4e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 ||| || || || || ||||| |||||||| || | || ||||| ||||| || ||||| Sbjct 3 ACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGGATACCTTC 62 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 |||||| |||||||| || || || || ||||| ||||| | |||||| || | || Sbjct 63 CTTATCCTGAATCTTCGCCTTGACGTTATCAATTGTATCGCTGCTTTCTACATCAAGCGT 122 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || || | || || ||||| |||||||| Sbjct 123 AATAGTCTTACCAGTAAGAGTTTTAACAAAGATCTGCAT 161 >seq38696 Length=3654 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||||| ||| | || | ||| ||||||||||| || || ||| || Sbjct 1767 CGCAGGACCAGGTGCACAGTCGCTTTGTCCTGGATATTATAATCCGAAAGGGTTCGGTCG 1708 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 | ||| || || |||||| |||| || | ||| || || || || || ||||| Sbjct 1707 TTTTCCAGCTGCTTTCCACTGTAGATGAGGCGTTGCTGGTCGAAGGGAATGCCCTCCTTC 1648 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||| |||||||||| || |||| || || ||| || ||| ||| | | | Sbjct 1647 TCGTGAACTTTTGCTTTTATGTTGACAATGGTGTCCACAGGCTCCACTACCAGACATGTG 1588 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | |||||||| ||| | ||||| Sbjct 1587 GTCTTGCCGGTAATCGTCTTTATAAACAATTGCAT 1553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981267593780415